Author results

3ABK
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BOVINE HEART CYTOCHROME C OXIDASE AT THE NO-BOUND FULLY REDUCED STATE (50K)
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Ohta, K., Muramoto, K., Shinzawa-Itoh, K., Yamashita, E., Yoshikawa, S., Tsukihara, T.
Deposit date:2009-12-16
Release date:2010-03-09
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of the NO-bound Cu(B) in bovine cytochrome c oxidase
Acta Crystallogr.,Sect.F, 66, 2010
3AG1
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BOVINE HEART CYTOCHROME C OXIDASE IN THE CARBON MONOXIDE-BOUND FULLY REDUCED STATE AT 280 K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
Deposit date:2010-03-19
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
Proc.Natl.Acad.Sci.USA, 107, 2010
3AG2
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BOVINE HEART CYTOCHROME C OXIDASE IN THE CARBON MONOXIDE-BOUND FULLY REDUCED STATE AT 100 K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
Deposit date:2010-03-19
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
Proc.Natl.Acad.Sci.USA, 107, 2010
3AG3
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BOVINE HEART CYTOCHROME C OXIDASE IN THE NITRIC OXIDE-BOUND FULLY REDUCED STATE AT 100 K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
Deposit date:2010-03-19
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
Proc.Natl.Acad.Sci.USA, 107, 2010
3AG4
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BOVINE HEART CYTOCHROME C OXIDASE IN THE CYANIDE ION-BOUND FULLY REDUCED STATE AT 100 K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Muramoto, K., Ohta, K., Shinzawa-Itoh, K., Kanda, K., Taniguchi, M., Nabekura, H., Yamashita, E., Tsukihara, T., Yoshikawa, S.
Deposit date:2010-03-19
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
Proc.Natl.Acad.Sci.USA, 107, 2010
3X2L
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X-RAY STRUCTURE OF PCCEL45A APO FORM AT 95K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Nakamura, A., Ishida, T., Ohta, K., Tanaka, H., Inaka, K., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2015-12-30
Method:X-RAY DIFFRACTION (0.83 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
2ZJB
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CRYSTAL STRUCTURE OF THE HUMAN DMC1-M200V POLYMORPHIC VARIANT
Descriptor:Meiotic recombination protein DMC1/LIM15 homolog
Authors:Hikiba, J., Hirota, K., Kagawa, W., Ikawa, S., Kinebuchi, T., Sakane, I., Takizawa, Y., Yokoyama, S., Mandon-Pepin, B., Nicolas, A., Shibata, T., Ohta, K., Kurumizaka, H.
Deposit date:2008-03-02
Release date:2008-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural and functional analyses of the DMC1-M200V polymorphism found in the human population
Nucleic Acids Res., 36, 2008
4Y04
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE 11 (DPP11) FROM PORPHYROMONAS GINGIVALIS (SPACE)
Descriptor:Peptidase S46, POTASSIUM ION, GLYCEROL
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Inaka, K., Tanaka, H., Yamada, M., Ohta, K., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2015-02-05
Release date:2015-07-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.
Sci Rep, 5, 2015
5GZT
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, SODIUM ION, PHOSPHATE ION, ...
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2017-01-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZU
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, PHOSPHATE ION
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZV
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, N-ACETYL-D-GLUCOSAMINE, PHOSPHATE ION
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5YYP
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STRUCTURE K137A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYQ
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STRUCTURE K78A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Mitsumoto, M., Ohta, K., Suzuki, M., Mikami, B., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
5YYR
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STRUCTURE K106A THAUMATIN
Descriptor:Preprothaumatin I, L(+)-TARTARIC ACID, GLYCEROL
Authors:Masuda, T., Kigo, S., Ohta, K., Mitsumoto, M., Mikami, B., Suzuki, M., Kitabatake, N., Tani, F.
Deposit date:2017-12-10
Release date:2018-03-21
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Positive Charges on the Surface of Thaumatin Are Crucial for the Multi-Point Interaction with the Sweet Receptor.
Front Mol Biosci, 5, 2018
3X2G
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X-RAY STRUCTURE OF PCCEL45A N92D APO FORM AT 100K
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2H
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X-RAY STRUCTURE OF PCCEL45A N92D WITH CELLOPENTAOSE AT 95K.
Descriptor:Endoglucanase V-like protein, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2I
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X-RAY STRUCTURE OF PCCEL45A N92D APO FORM AT 298K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2J
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X-RAY STRUCTURE OF PCCEL45A D114N APO FORM AT 95K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.301 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2K
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X-RAY STRUCTURE OF PCCEL45A D114N WITH CELLOPENTAOSE AT 95K.
Descriptor:Endoglucanase V-like protein, CELLOPENTAOSE, ALPHA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.182 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2M
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X-RAY STRUCTURE OF PCCEL45A WITH CELLOPENTAOSE AT 0.64 ANGSTROM RESOLUTION.
Descriptor:Endoglucanase V-like protein, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2015-12-30
Method:X-RAY DIFFRACTION (0.64 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2N
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PROTON RELAY PATHWAY IN INVERTING CELLULASE
Descriptor:Endoglucanase V-like protein, SULFATE ION
Authors:Nakamura, A., Ishida, T., Fushinobu, S., Igarashi, K., Samejima, M.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2O
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NEUTRON AND X-RAY JOINT REFINED STRUCTURE OF PCCEL45A APO FORM AT 298K.
Descriptor:Endoglucanase V-like protein
Authors:Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Tanaka, I., Niimura, N., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Last modified:2018-05-16
Method:NEUTRON DIFFRACTION (1.5 Å), X-RAY DIFFRACTION
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2P
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NEUTRON AND X-RAY JOINT REFINED STRUCTURE OF PCCEL45A WITH CELLOPENTAOSE AT 298K.
Descriptor:Endoglucanase V-like protein, CELLOPENTAOSE
Authors:Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Tanaka, I., Niimura, N., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2018-05-16
Method:NEUTRON DIFFRACTION (1.518 Å), X-RAY DIFFRACTION
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
4ZM7
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PCCEL45A N105D MUTATNT AT CRYO CONDITION
Descriptor:Endoglucanase V-like protein
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2015-05-02
Release date:2015-09-02
Method:X-RAY DIFFRACTION (0.701 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
Sci Adv, 1, 2015
3WDN
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HIGH-RESOLUTION X-RAY CRYSTAL STRUCTURE OF BOVINE H-PROTEIN USING A HIGH-PRESSURE CRYOCOOLING METHOD
Descriptor:Glycine cleavage system H protein, mitochondrial, GLYCEROL
Authors:Higashiura, A., Nakagawa, A.
Deposit date:2013-06-19
Release date:2013-10-30
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method
J.SYNCHROTRON RADIAT., 20, 2013
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