Author results

1O5P
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SOLUTION STRUCTURE OF HOLO-NEOCARZINOSTATIN
Descriptor:Neocarzinostatin, NEOCARZINOSTATIN-CHROMOPHORE
Authors:Takashima, H., Ishino, T., Yoshida, T., Hasuda, K., Ohkubo, T., Kobayashi, Y.
Deposit date:2003-10-04
Release date:2003-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR Structure Investigation for Releasing Mechanism of Neocarzinostatin Chromophore from the Holoprotein
J.Biol.Chem., 280, 2005
1BQT
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THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
Descriptor:INSULIN-LIKE GROWTH FACTOR-I
Authors:Sato, A., Nishimura, S., Ohkubo, T., Kyogoku, Y., Koyama, S., Kobayashi, M., Yasuda, T., Kobayashi, Y.
Deposit date:1998-08-18
Release date:1999-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional structure of human insulin-like growth factor-I (IGF-I) determined by 1H-NMR and distance geometry.
Int.J.Pept.Protein Res., 41, 1993
1GE9
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SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Yoshida, T., Uchiyama, S., Nakano, H., Kashimori, H., Kijima, H., Ohshima, T., Saihara, Y., Ishino, T., Shimahara, T., Yoshida, T., Yokose, K., Ohkubo, T., Kaji, A., Kobayashi, Y.
Deposit date:2000-10-19
Release date:2001-05-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the ribosome recycling factor from Aquifex aeolicus.
Biochemistry, 40, 2001
3VOR
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CRYSTAL STRUCTURE ANALYSIS OF THE COFA
Descriptor:CFA/III pilin
Authors:Fukakusa, S., Kawahara, K., Nakamura, S., Iwasita, T., Baba, S., Nishimura, M., Kobayashi, Y., Honda, T., Iida, T., Taniguchi, T., Ohkubo, T.
Deposit date:2012-02-06
Release date:2012-09-26
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing
Acta Crystallogr.,Sect.D, 68, 2012
5AX6
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THE CRYSTAL STRUCTURE OF COFB, THE MINOR PILIN SUBUNIT OF CFA/III FROM HUMAN ENTEROTOXIGENIC ESCHERICHIA COLI.
Descriptor:CofB, ACETATE ION
Authors:Kawahara, K., Oki, K., Fukaksua, F., Maruno, T., Kobayashi, Y., Daisuke, M., Taniguchi, T., Honda, T., Iida, T., Nakamura, S., Ohkubo, T.
Deposit date:2015-07-16
Release date:2016-03-09
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Homo-trimeric Structure of the Type IVb Minor Pilin CofB Suggests Mechanism of CFA/III Pilus Assembly in Human Enterotoxigenic Escherichia coli
J.Mol.Biol., 428, 2016
5YPZ
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CRYSTAL STRUCTURE OF MINOR PILIN COFB FROM CFA/III COMPLEXED WITH N-TERMINAL PEPTIDE FRAGMENT OF COFJ
Descriptor:CofB, CofJ
Authors:Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2018-07-25
Method:X-RAY DIFFRACTION (3.521 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YQ0
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CRYSTAL STRUCTURE OF SECRETED PROTEIN COFJ FROM ETEC.
Descriptor:CofJ, CALCIUM ION
Authors:Oki, H., Kawahara, K., Maruno, T., Imai, T., Muroga, Y., Fukakusa, S., Iwashita, T., Kobayashi, Y., Matsuda, S., Kodama, T., Iida, T., Yoshida, T., Ohkubo, T., Nakamura, S.
Deposit date:2017-11-04
Release date:2018-06-27
Last modified:2018-07-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Interplay of a secreted protein with type IVb pilus for efficient enterotoxigenicEscherichia colicolonization
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1IS1
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CRYSTAL STRUCTURE OF RIBOSOME RECYCLING FACTOR FROM VIBRIO PARAHAEMOLYTICUS
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Nakano, H., Yamaichi, Y., Uchiyama, S., Yoshida, T., Nishina, K., Kato, H., Ohkubo, T., Honda, T., Yamagata, Y., Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
1WKI
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SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L16 FROM THERMUS THERMOPHILUS HB8
Descriptor:LSU ribosomal protein L16P
Authors:Nishimura, M., Yoshida, T., Shirouzu, M., Terada, T., Kuramitsu, S., Yokoyama, S., Ohkubo, T., Kobayashi, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-31
Release date:2004-12-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of Ribosomal Protein L16 from Thermus thermophilus HB8
J.Mol.Biol., 344, 2004
1Y1B
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SOLUTION STRUCTURE OF ANEMONIA ELASTASE INHIBITOR
Descriptor:Elastase inhibitor
Authors:Hemmi, H., Kumazaki, T., Yoshizawa-Kumagaye, K., Nishiuchi, Y., Yoshida, T., Ohkubo, T., Kobayashi, Y.
Deposit date:2004-11-18
Release date:2005-07-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
1Y1C
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SOLUTION STRUCTURE OF ANEMONIA ELASTASE INHIBITOR ANALOGUE
Descriptor:Elastase inhibitor
Authors:Hemmi, H., Kumazaki, T., Yoshizawa-Kumagaye, K., Nishiuchi, Y., Yoshida, T., Ohkubo, T., Kobayashi, Y.
Deposit date:2004-11-18
Release date:2005-07-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
2KTD
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SOLUTION STRUCTURE OF MOUSE LIPOCALIN-TYPE PROSTAGLANDIN D SYNTHASE / SUBSTRATE ANALOG (U-46619) COMPLEX
Descriptor:Prostaglandin-H2 D-isomerase, (5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid
Authors:Shimamoto, S., Maruo, H., Yoshida, T., Kato, N., Ohkubo, T.
Deposit date:2010-01-27
Release date:2011-02-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of Lipocalin-type Prostaglandin D synthase / Substrate analog complex reveals Open-Closed Conformational Change required for Substrate Recognition
To be Published
2PA2
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CRYSTAL STRUCTURE OF HUMAN RIBOSOMAL PROTEIN L10 CORE DOMAIN
Descriptor:60S ribosomal protein L10, POTASSIUM ION
Authors:Nishimura, M., Kaminishi, T., Takemoto, C., Kawazoe, M., Yoshida, T., Tanaka, A., Sugano, S., Shirouzu, M., Ohkubo, T., Yokoyama, S., Kobayashi, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-27
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold
J.Mol.Biol., 377, 2008
3B2C
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CRYSTAL STRUCTURE OF THE COLLAGEN TRIPLE HELIX MODEL [{PRO-HYP(R)-GLY}4-{HYP(S)-PRO-GLY}2-{PRO-HYP(R)-GLY}4]3
Descriptor:Collagen-like peptide
Authors:Motooka, D., Kawahara, K., Nakamura, S., Doi, M., Nishi, Y., Nishiuchi, Y., Nakazawa, T., Yoshida, T., Ohkubo, T., Kobayashi, Y., Kang, Y.K., Uchiyama, S.
Deposit date:2011-07-26
Release date:2012-04-04
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units
Biopolymers, 98, 2011
3WJ4
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIBUTYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, tributylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIPHENYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
5H03
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CRYSTAL STRUCTURE OF AN ADP-RIBOSYLATING TOXIN BECA FROM C. PERFRINGENS
Descriptor:Binary enterotoxin of Clostridium perfringens component a
Authors:Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
Deposit date:2016-10-03
Release date:2016-11-02
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
Biochem.Biophys.Res.Commun., 480, 2016
5H04
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CRYSTAL STRUCTURE OF AN ADP-RIBOSYLATING TOXIN BECA OF A NOVEL BINARY ENTEROTOXIN OF C. PERFRINGENS WITH NADH
Descriptor:Binary enterotoxin of Clostridium perfringens component a, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Authors:Kawahara, K., Yonogi, S., Munetomo, R., Oki, H., Yoshida, T., Ohkubo, T., Kumeda, Y., Matsuda, S., Kodama, T., Iida, T., Nakamura, S.
Deposit date:2016-10-03
Release date:2016-11-02
Last modified:2016-11-09
Method:X-RAY DIFFRACTION (1.825 Å)
Cite:Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
Biochem.Biophys.Res.Commun., 480, 2016
2LAA
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SOLUTION STRUCUTURE OF THE CBM25-1 OF BETA/ALPHA-AMYLASE FROM PAENIBACILLUS POLYMYXA
Descriptor:Beta/alpha-amylase
Authors:Horibe, I., Nishimura, S., Takahashi, R., Ohkubo, T., Yoshida, T.
Deposit date:2011-03-09
Release date:2012-04-04
Method:SOLUTION NMR
Cite:A functional and structural analysis of tundem family 25 carbohydrate-binding modules from Paenibacillus polymyxa beta/alpha-amylase
To be Published
2LAB
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SOLUTION STRUCUTURE OF THE CBM25-2 OF BETA/ALPHA-AMYLASE FROM PAENIBACILLUS POLYMYXA
Descriptor:Beta/alpha-amylase
Authors:Takahashi, R., Nishimura, S., Ohkubo, T., Yoshida, T.
Deposit date:2011-03-09
Release date:2012-04-04
Method:SOLUTION NMR
Cite:A functional and structural analysis of tundem family 25 carbohydrate-binding modules from Paenibacillus polymyxa beta/alpha-amylase
To be Published
1BQF
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GROWTH-BLOCKING PEPTIDE (GBP) FROM PSEUDALETIA SEPARATA
Descriptor:PROTEIN (GROWTH-BLOCKING PEPTIDE)
Authors:Aizawa, T., Fujitani, N., Hayakawa, Y., Ohnishi, A., Ohkubo, T., Kwano, K., Hikichi, K., Nitta, K.
Deposit date:1998-08-09
Release date:1998-12-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an insect growth factor, growth-blocking peptide.
J.Biol.Chem., 274, 1999
1DHH
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GG)R(AGAU)D(GAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*G)-R(P*AP*GP*AP*U)-D(P*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-10-18
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1DRN
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GGAGA)R(UGAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*GP*AP*GP*A)-R(P*UP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-11-15
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1ISE
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CRYSTAL STRUCTURE OF A MUTANT OF RIBOSOME RECYCLING FACTOR FROM ESCHERICHIA COLI, ARG132GLY
Descriptor:Ribosome Recycling Factor
Authors:Nakano, H., Yoshida, T., Oka, S., Uchiyama, S., Nishina, K., Ohkubo, T., Kato, H., Yamagata, Y., Kobayashi, Y.
Deposit date:2001-11-30
Release date:2003-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
To be Published
1IWC
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TFE-INDUDED STRUCTURE OF THE N-TERMINAL DOMAIN OF PIG GASTRIC H/K-ATPASE
Descriptor:gastric H/K-ATPase
Authors:Fujitani, N., Kanagawa, M., Aizawa, T., Ohkubo, T., Kaya, S., Demura, M., Kawano, K., Taniguchi, K., Nitta, K.
Deposit date:2002-05-02
Release date:2002-11-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure determination and conformational change induced by tyrosine phosphorylation of the N-terminal domain of the alpha-chain of pig gastric H+/K+-ATPase
Biochem.Biophys.Res.Commun., 300, 2003
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