Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2LIY
DownloadVisualize
BU of 2liy by Molmil
Plant peptide hormone regulating stomatal density
Descriptor: EPIDERMAL PATTERNING FACTOR-like protein 9
Authors:Ohki, S.
Deposit date:2011-09-02
Release date:2012-09-05
Method:SOLUTION NMR
Cite:The NMR structure of stomagen reveals the basis of stomatal density regulation by plant peptide hormones
Nat Commun, 2, 2011
1J2N
DownloadVisualize
BU of 1j2n by Molmil
Solution structure of CPI-17(22-120) T38D
Descriptor: 17-kDa PKC-potentiated inhibitory protein of PP1
Authors:Ohki, S, Eto, M, Shimizu, M, Takada, R, Brautigan, D.L, Kainosho, M.
Deposit date:2003-01-07
Release date:2003-06-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Distinctive Solution Conformation of Phosphatase Inhibitor CPI-17 Substituted with Aspartate at the Phosphorylation-site Threonine Residue
J.Mol.Biol., 326, 2003
1J2M
DownloadVisualize
BU of 1j2m by Molmil
Solution structure of CPI-17(22-120)
Descriptor: 17-kDa PKC-potentiated inhibitory protein of PP1
Authors:Ohki, S, Eto, M, Takada, R, Shimizu, M, Brautigan, D.L, Kainosho, M.
Deposit date:2003-01-07
Release date:2003-06-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Distinctive Solution Conformation of Phosphatase Inhibitor CPI-17 Substituted with Aspartate at the Phosphorylation-site Threonine Residue
J.Mol.Biol., 326, 2003
1K5O
DownloadVisualize
BU of 1k5o by Molmil
CPI-17(35-120) deletion mutant
Descriptor: CPI-17
Authors:Ohki, S, Eto, M, Kariya, E, Hayano, T, Hayashi, Y, Yazawa, M, Brautigan, D, Kainosho, M.
Deposit date:2001-10-11
Release date:2002-10-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution NMR Structure of the Myosin Phosphatase Inhibitor Protein CPI-17 Shows Phosphorylation-induced Conformational Changes Responsible for Activation
J.Mol.Biol., 314, 2001
8GXT
DownloadVisualize
BU of 8gxt by Molmil
Antibacterial peptide, mehamycin
Descriptor: Antibacterial peptide
Authors:Isozumi, N, Ohki, S.
Deposit date:2022-09-21
Release date:2023-09-27
Method:SOLUTION NMR
Cite:Antibacterial peptide, mehamycin
To Be Published
7DAB
DownloadVisualize
BU of 7dab by Molmil
plant peptide hormone
Descriptor: Maternally expressed gene14
Authors:Umetsu, Y, Ohki, S.
Deposit date:2020-10-16
Release date:2021-10-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:plant peptide hormone
To Be Published
7WKF
DownloadVisualize
BU of 7wkf by Molmil
Antimicrobial peptide-LaIT2
Descriptor: Beta-KTx-like peptide LaIT2
Authors:Tamura, M, Morita, H, Ohki, S.
Deposit date:2022-01-09
Release date:2023-04-05
Method:SOLUTION NMR
Cite:Structural and functional studies of LaIT2, an antimicrobial and insecticidal peptide from Liocheles australasiae.
Toxicon, 214, 2022
2RTY
DownloadVisualize
BU of 2rty by Molmil
Solution structure of navitoxin
Descriptor: navitoxin
Authors:Umetsu, Y, Ohki, S.
Deposit date:2013-10-16
Release date:2014-04-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Experimental conversion of a defensin into a neurotoxin: implications for origin of toxic function
MOL.BIOL.EVOL., 31, 2014
2RU0
DownloadVisualize
BU of 2ru0 by Molmil
Solution structure of actinomycesin
Descriptor: Arthropod defensin
Authors:Umetsu, Y, Gao, B, Zhu, S, Ohki, S.
Deposit date:2013-10-17
Release date:2014-10-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of actinomycesin
To be Published
2RU1
DownloadVisualize
BU of 2ru1 by Molmil
Solution structure of esf3
Descriptor: Uncharacterized protein
Authors:Umetsu, Y, Mori, M, Ohki, S.
Deposit date:2013-11-06
Release date:2014-04-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Central cell-derived peptides regulate early embryo patterning in flowering plants
Science, 344, 2014
2RTZ
DownloadVisualize
BU of 2rtz by Molmil
Solution structure of MarkTX-7
Descriptor: Potassium channel blocker MarkTX-7
Authors:Umetsu, Y, Ohki, S.
Deposit date:2013-10-17
Release date:2014-10-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of MarkTX-7
To be Published
7EAU
DownloadVisualize
BU of 7eau by Molmil
SIB1, an effector of Colletotrichum orbiculare
Descriptor: SIN1
Authors:Mori, M, Ohki, S, Kurita, J.
Deposit date:2021-03-08
Release date:2021-11-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Fungal effector SIB1 of Colletotrichum orbiculare has unique structural features and can suppress plant immunity in Nicotiana benthamiana.
J.Biol.Chem., 297, 2021
1VDJ
DownloadVisualize
BU of 1vdj by Molmil
Solution structure of actin-binding domain of troponin in Ca2+-bound state
Descriptor: Troponin I, fast skeletal muscle
Authors:Murakami, K, Yumoto, F, Ohki, S, Yasunaga, T, Tanokura, M, Wakabayashi, T.
Deposit date:2004-03-22
Release date:2005-09-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
1VDI
DownloadVisualize
BU of 1vdi by Molmil
Solution structure of actin-binding domain of troponin in Ca2+-free state
Descriptor: Troponin I, fast skeletal muscle
Authors:Murakami, K, Yumoto, F, Ohki, S, Yasunaga, T, Tanokura, M, Wakabayashi, T.
Deposit date:2004-03-22
Release date:2005-09-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
7CKD
DownloadVisualize
BU of 7ckd by Molmil
Solution structure of NCR169 oxidized form 1 from Medicago truncatula
Descriptor: Nodule Cysteine-Rich (NCR) secreted peptide
Authors:Isozumi, N, Masubuchi, Y, Ohki, S.
Deposit date:2020-07-16
Release date:2021-05-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and antimicrobial activity of NCR169, a nodule-specific cysteine-rich peptide of Medicago truncatula.
Sci Rep, 11, 2021
7CKE
DownloadVisualize
BU of 7cke by Molmil
Solution structure of NCR169 oxidized form 2 from Medicago truncatula
Descriptor: Nodule Cysteine-Rich (NCR) secreted peptide
Authors:Isozumi, N, Masubuchi, Y, Ohki, S.
Deposit date:2020-07-16
Release date:2021-05-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and antimicrobial activity of NCR169, a nodule-specific cysteine-rich peptide of Medicago truncatula.
Sci Rep, 11, 2021
1F53
DownloadVisualize
BU of 1f53 by Molmil
NMR STRUCTURE OF KILLER TOXIN-LIKE PROTEIN SKLP
Descriptor: YEAST KILLER TOXIN-LIKE PROTEIN
Authors:Ohki, S, Kariya, E, Hiraga, K, Wakamiya, A, Isobe, T, Oda, K, Kainosho, M.
Deposit date:2000-06-12
Release date:2000-12-27
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structure of Streptomyces killer toxin-like protein, SKLP: further evidence for the wide distribution of single-domain betagamma-crystallin superfamily proteins.
J.Mol.Biol., 305, 2001
2KJY
DownloadVisualize
BU of 2kjy by Molmil
MYPT1(658-714)
Descriptor: Protein phosphatase 1 regulatory subunit 12A
Authors:Mori, S, Iwaoka, R, Eto, M, Ohki, S.
Deposit date:2009-06-11
Release date:2009-09-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the inhibitory phosphorylation domain of myosin phosphatase targeting subunit 1
Proteins, 77, 2009
2RR7
DownloadVisualize
BU of 2rr7 by Molmil
Microtubule Binding Domain of DYNEIN-C
Descriptor: Dynein heavy chain 9
Authors:Kato, Y, Yagi, T, Ohki, S, Burgess, S, Honda, S, Kamiya, R, Tanokura, M.
Deposit date:2010-06-04
Release date:2011-06-08
Last modified:2015-09-09
Method:SOLUTION NMR
Cite:Structure of the microtubule-binding domain of flagellar dynein
Structure, 22, 2014
7WN2
DownloadVisualize
BU of 7wn2 by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-01-17
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
7WNB
DownloadVisualize
BU of 7wnb by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-01-18
Release date:2023-04-19
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
7YOW
DownloadVisualize
BU of 7yow by Molmil
Crystal structure of SARS-CoV-2 omicron variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: Fab Heavy chain, Fab Light chain, SULFATE ION, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-08-02
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
8I5I
DownloadVisualize
BU of 8i5i by Molmil
Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab
Descriptor: Fab Heavy chain, Fab Light chain, Spike protein S1
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2023-01-25
Release date:2023-04-19
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
8I5H
DownloadVisualize
BU of 8i5h by Molmil
Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2023-01-25
Release date:2023-04-19
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
5IX5
DownloadVisualize
BU of 5ix5 by Molmil
NMR structure of antibacterial factor-2
Descriptor: Antibacterial factor-related peptide 2
Authors:Masakatsu, K, Umetsu, Y, Rumi, F, Kikukawa, T, Ohki, S, Mizuguchi, M, Demura, M, Aizawa, T.
Deposit date:2016-03-23
Release date:2017-03-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of ABF-2 (antibacterial factor-2) from C. elegans and the interaction with membrane mimetic systems
To Be Published

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon