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1N87
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BU of 1n87 by Molmil
Solution structure of the U-box of Prp19
Descriptor: Pre-mRNA splicing factor PRP19
Authors:Chazin, W.J, Ohi, M.D, Vander Kooi, C.W.
Deposit date:2002-11-19
Release date:2003-04-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural insights into the U-box, a domain associated with multi-ubiquitination
Nat.Struct.Biol., 10, 2003
2BAY
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BU of 2bay by Molmil
Crystal structure of the Prp19 U-box dimer
Descriptor: Pre-mRNA splicing factor PRP19
Authors:Vander Kooi, C.W, Ohi, M.D, Rosenberg, J.A, Oldham, M.L, Newcomer, M.E, Gould, K.L, Chazin, W.J.
Deposit date:2005-10-15
Release date:2006-01-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Prp19 U-box Crystal Structure Suggests a Common Dimeric Architecture for a Class of Oligomeric E3 Ubiquitin Ligases.
Biochemistry, 45, 2006
2NVU
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BU of 2nvu by Molmil
Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein activation complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera, ...
Authors:Huang, D.T, Hunt, H.W, Zhuang, M, Ohi, M.D, Holton, J.M, Schulman, B.A.
Deposit date:2006-11-13
Release date:2007-01-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity.
Nature, 445, 2007
6OEE
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BU of 6oee by Molmil
Structure of CagT from a cryo-EM reconstruction of a T4SS
Descriptor: Type IV secretion system apparatus protein CagT
Authors:Chung, J.M, Sheedlo, M.J, Campbell, A, Sawhney, N, Frick-Cheng, A.E, Lacy, D.B, Cover, T.L, Ohi, M.D.
Deposit date:2019-03-27
Release date:2019-07-03
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of the Helicobacter pylori Cag type IV secretion system.
Elife, 8, 2019
5UMI
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BU of 5umi by Molmil
Clostridium difficile TcdA-CROPs bound to PA50 Fab
Descriptor: PA50 Fab Heavy chain, PA50 Fab Light chain, Toxin A
Authors:Kroh, H.K, Chandrasekaran, R, Rosenthal, K, Woods, R, Jin, X, Ohi, M.D, Nyborg, A.C, Rainey, G.J, Warrener, P, Spiller, B.W, Lacy, D.B.
Deposit date:2017-01-27
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Use of a neutralizing antibody helps identify structural features critical for binding of Clostridium difficile toxin TcdA to the host cell surface.
J. Biol. Chem., 292, 2017
8V6I
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BU of 8v6i by Molmil
DNA elongation complex (configuration 1) of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-12-01
Release date:2023-12-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (14.06 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 2024
8V6G
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BU of 8v6g by Molmil
DNA initiation complex (configuration 1) of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-12-01
Release date:2023-12-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (11.16 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 2024
8V6J
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BU of 8v6j by Molmil
DNA elongation complex (configuration 2) of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-12-01
Release date:2023-12-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (11.11 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 2024
8V6H
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BU of 8v6h by Molmil
DNA initiation complex (configuration 2) of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-12-01
Release date:2023-12-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (11.11 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 2024
7SC0
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BU of 7sc0 by Molmil
CryoEM structure of the Caveolin-1 8S complex
Descriptor: Caveolin-1
Authors:Porta, J.P, Ohi, M.D, Kenworthy, A.K, Karakas, E.
Deposit date:2021-09-26
Release date:2022-05-25
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular architecture of the human caveolin-1 complex.
Sci Adv, 8, 2022
8G9L
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BU of 8g9l by Molmil
DNA initiation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA primase large subunit, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-02-21
Release date:2023-04-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 2024
8G9O
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BU of 8g9o by Molmil
Complete DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA primase large subunit, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-02-21
Release date:2023-04-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 2024
8G9N
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BU of 8g9n by Molmil
Partial DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ...
Authors:Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
Deposit date:2023-02-21
Release date:2023-04-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 2024
8F3C
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BU of 8f3c by Molmil
Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Descriptor: DNA (38-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
Deposit date:2022-11-09
Release date:2023-06-21
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G2W
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BU of 8g2w by Molmil
Cryo-EM structure of 3DVA component 2 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Descriptor: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
Deposit date:2023-02-06
Release date:2023-06-21
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G00
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BU of 8g00 by Molmil
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Descriptor: DNA (31-MER), DNA (39-mer), DNA-directed RNA polymerase subunit alpha, ...
Authors:Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
Deposit date:2023-01-31
Release date:2023-06-21
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G7E
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BU of 8g7e by Molmil
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, DNA (31-MER), DNA (39-mer), ...
Authors:Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
Deposit date:2023-02-16
Release date:2023-06-21
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G1S
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BU of 8g1s by Molmil
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
Descriptor: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
Deposit date:2023-02-02
Release date:2023-06-21
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G8Z
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BU of 8g8z by Molmil
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, DNA (31-MER), DNA (39-MER), ...
Authors:Porta, J.C, Ohi, M.D, Walter, N.G, Frank, A.T, Deb, I, Meze, K.
Deposit date:2023-02-20
Release date:2023-06-21
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G4W
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BU of 8g4w by Molmil
Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, DNA (31-MER), DNA (39-mer), ...
Authors:Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
Deposit date:2023-02-10
Release date:2023-06-21
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
7MUW
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BU of 7muw by Molmil
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 4
Descriptor: DUF2807 domain-containing protein, DotC, DotD, ...
Authors:Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
Deposit date:2021-05-14
Release date:2021-10-06
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021
7MUC
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BU of 7muc by Molmil
Legionella pneumophila Dot/Icm T4SS C1 Reconstruction
Descriptor: DUF2807 domain-containing protein, DotC, DotD, ...
Authors:Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
Deposit date:2021-05-14
Release date:2021-10-06
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021
7MUQ
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BU of 7muq by Molmil
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 1
Descriptor: DUF2807 domain-containing protein, DotC, DotD, ...
Authors:Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
Deposit date:2021-05-14
Release date:2021-10-06
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021
7MUE
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BU of 7mue by Molmil
Legionella pneumophila Dot/Icm T4SS PR
Descriptor: DotF, IcmE protein, Type IV secretion protein IcmK, ...
Authors:Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
Deposit date:2021-05-14
Release date:2021-10-06
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021
7MUV
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BU of 7muv by Molmil
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 3
Descriptor: DUF2807 domain-containing protein, DotC, DotD, ...
Authors:Sheedlo, M.J, Durie, C.L, Swanson, M, Lacy, D.B, Ohi, M.D.
Deposit date:2021-05-14
Release date:2021-10-06
Last modified:2022-04-20
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife, 10, 2021

 

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