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3GNE
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BU of 3gne by Molmil
Crystal structure of alginate lyase vAL-1 from Chlorella virus
Descriptor: CITRATE ANION, GLYCEROL, VAL-1
Authors:Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-03-17
Release date:2009-10-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3IM0
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BU of 3im0 by Molmil
Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)
Descriptor: VAL-1, beta-D-glucopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-08-08
Release date:2009-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
1QG1
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BU of 1qg1 by Molmil
GROWTH FACTOR RECEPTOR BINDING PROTEIN SH2 DOMAIN COMPLEXED WITH AN SHC-DERIVED PEPTIDE
Descriptor: PROTEIN (GROWTH FACTOR RECEPTOR BINDING PROTEIN), PROTEIN (SHC-DERIVED PEPTIDE)
Authors:Ogura, K.
Deposit date:1999-04-19
Release date:1999-04-27
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the SH2 domain of Grb2 complexed with the Shc-derived phosphotyrosine-containing peptide.
J.Mol.Biol., 289, 1999
1WLP
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BU of 1wlp by Molmil
Solution Structure Of The P22Phox-P47Phox Complex
Descriptor: Cytochrome b-245 light chain, Neutrophil cytosol factor 1
Authors:Ogura, K, Torikai, S, Saikawa, K, Yuzawa, S, Sumimoto, H, Inagaki, F.
Deposit date:2004-06-29
Release date:2005-10-04
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR solution structure of the tandem Src homology 3 domains of p47phox complexed with a p22phox-derived proline-rich peptide
J.Biol.Chem., 281, 2006
1K1Z
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BU of 1k1z by Molmil
Solution structure of N-terminal SH3 domain mutant(P33G) of murine Vav
Descriptor: vav
Authors:Ogura, K, Nagata, K, Horiuchi, M, Ebisui, E, Hasuda, T, Yuzawa, S, Nishida, M, Hatanaka, H, Inagaki, F.
Deposit date:2001-09-26
Release date:2001-10-10
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain
J.BIOMOL.NMR, 22, 2002
2Z42
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BU of 2z42 by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1
Descriptor: Alginate lyase, SULFATE ION
Authors:Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2007-06-12
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2ZAB
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BU of 2zab by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG)
Descriptor: Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAC
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Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG)
Descriptor: Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZA9
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Crystal Structure of Alginate lyase A1-II' N141C/N199C
Descriptor: Alginate lyase, SULFATE ION
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAA
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Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG)
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL
Authors:Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
3A0N
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BU of 3a0n by Molmil
Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus
Descriptor: VAL-1, beta-D-glucopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-03-23
Release date:2009-10-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
2LHH
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BU of 2lhh by Molmil
Solution structure of Ca2+-bound yCaM
Descriptor: CALCIUM ION, Calmodulin
Authors:Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F.
Deposit date:2011-08-10
Release date:2012-08-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
2LHI
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BU of 2lhi by Molmil
Solution structure of Ca2+/CNA1 peptide-bound yCaM
Descriptor: CALCIUM ION, Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1
Authors:Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F.
Deposit date:2011-08-10
Release date:2012-08-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
1X0N
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BU of 1x0n by Molmil
NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor
Descriptor: 4-[(10S,14S,18S)-18-(2-AMINO-2-OXOETHYL)-14-(1-NAPHTHYLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL]BENZYLPHOSPHONIC ACID, Growth factor receptor-bound protein 2
Authors:Ogura, K, Shiga, T, Yuzawa, S, Yokochi, M, Burke, T.R, Inagaki, F.
Deposit date:2005-03-24
Release date:2005-04-19
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor
To be Published
2KFJ
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BU of 2kfj by Molmil
Solution structure of the loop deletion mutant of PB1 domain of Cdc24p
Descriptor: Cell division control protein 24
Authors:Ogura, K, Tandai, T, Yoshinaga, S, Kobashigawa, Y, Kumeta, H, Inagaki, F.
Deposit date:2009-02-22
Release date:2009-10-06
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
2YZ0
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BU of 2yz0 by Molmil
Solution Structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
Descriptor: Serine/threonine-protein kinase GCN2
Authors:Ogura, K, Torikai, S, Kumeta, H, Inagaki, F.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
to be published
2KFK
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BU of 2kfk by Molmil
Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain
Descriptor: Bud emergence protein 1, Cell division control protein 24
Authors:Kobashigawa, Y, Yoshinaga, S, Tandai, T, Ogura, K, Inagaki, F.
Deposit date:2009-02-23
Release date:2009-10-06
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
1AK6
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BU of 1ak6 by Molmil
DESTRIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DESTRIN
Authors:Hatanaka, H, Moriyama, K, Ogura, K, Ichikawa, S, Yahara, I, Inagaki, F.
Deposit date:1997-05-29
Release date:1997-11-12
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Tertiary structure of destrin and structural similarity between two actin-regulating protein families.
Cell(Cambridge,Mass.), 85, 1996
1AK7
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BU of 1ak7 by Molmil
DESTRIN, NMR, 20 STRUCTURES
Descriptor: DESTRIN
Authors:Hatanaka, H, Moriyama, K, Ogura, K, Ichikawa, S, Yahara, I, Inagaki, F.
Deposit date:1997-05-29
Release date:1997-10-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Tertiary structure of destrin and structural similarity between two actin-regulating protein families.
Cell(Cambridge,Mass.), 85, 1996
4E1Y
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BU of 4e1y by Molmil
Alginate lyase A1-III H192A apo form
Descriptor: Alginate lyase
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-03-07
Release date:2012-04-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4F13
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BU of 4f13 by Molmil
Alginate lyase A1-III Y246F complexed with tetrasaccharide
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-05-06
Release date:2012-06-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4F10
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Alginate lyase A1-III H192A complexed with tetrasaccharide
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-05-05
Release date:2012-06-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
1AHK
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DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DER F 2
Authors:Ichikawa, S, Hatanaka, H, Yuuki, T, Iwamoto, N, Ogura, K, Okumura, Y, Inagaki, F.
Deposit date:1997-04-07
Release date:1998-04-08
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of Der f 2, the major mite allergen for atopic diseases.
J.Biol.Chem., 273, 1998
1AHM
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DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE, NMR, 10 STRUCTURES
Descriptor: DER F 2
Authors:Ichikawa, S, Hatanaka, H, Yuuki, T, Iwamoto, N, Ogura, K, Okumura, Y, Inagaki, F.
Deposit date:1997-04-07
Release date:1998-04-08
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of Der f 2, the major mite allergen for atopic diseases.
J.Biol.Chem., 273, 1998
1GCQ
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CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 DOMAINS
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2, VAV PROTO-ONCOGENE
Authors:Nishida, M, Nagata, K, Hachimori, Y, Ogura, K, Inagaki, F.
Deposit date:2000-08-08
Release date:2001-08-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J., 20, 2001

 

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