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6L98
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BU of 6l98 by Molmil
Crystalline cast nephropathy-causing Bence-Jones protein AK: An entire immunoglobulin lambda light chain dimer
Descriptor: Bence-Jones protein lambda light chain AK
Authors:Nakagaki, T, Noguchi, K, Yohda, M, Odaka, M, Wakui, H, Matsumura, H.
Deposit date:2019-11-08
Release date:2020-09-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Multiple Myeloma-Associated Ig Light Chain Crystalline Cast Nephropathy.
Kidney Int Rep, 5, 2020
8IMR
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BU of 8imr by Molmil
Structure of ligand-free human macrophage migration inhibitory factor
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor, ...
Authors:Sugishima, K, Noguchi, K, Yohda, M, Odaka, M, Matsumura, H.
Deposit date:2023-03-07
Release date:2024-03-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Identification of methotrexate as an inhibitor of macrophage migration inhibitory factor by high-resolution crystal structure analysis
To Be Published
1HSQ
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BU of 1hsq by Molmil
SOLUTION STRUCTURE OF THE SH3 DOMAIN OF PHOSPHOLIPASE CGAMMA
Descriptor: PHOSPHOLIPASE C-GAMMA (SH3 DOMAIN)
Authors:Kohda, D, Hatanaka, H, Odaka, M, Inagaki, F.
Deposit date:1994-06-13
Release date:1994-08-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of phospholipase C-gamma.
Cell(Cambridge,Mass.), 72, 1993
7XTX
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BU of 7xtx by Molmil
High resolution crystal structure of human macrophage migration inhibitory factor in complex with methotrexate
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor, ...
Authors:Sugishima, K, Noguchi, K, Yohda, M, Odaka, M, Matsumura, H.
Deposit date:2022-05-18
Release date:2023-05-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Identification of methotrexate as an inhibitor of macrophage migration inhibitory factor by high-resolution crystal structure analysis
To Be Published
2HSP
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BU of 2hsp by Molmil
SOLUTION STRUCTURE OF THE SH3 DOMAIN OF PHOSPHOLIPASE CGAMMA
Descriptor: PHOSPHOLIPASE C-GAMMA (SH3 DOMAIN)
Authors:Kohda, D, Hatanaka, H, Odaka, M, Inagaki, F.
Deposit date:1994-06-13
Release date:1994-08-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of phospholipase C-gamma.
Cell(Cambridge,Mass.), 72, 1993
4ZD6
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BU of 4zd6 by Molmil
Halohydrin hydrogen-halide-lyase, HheB
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Halohydrin epoxidase B, ...
Authors:Watanabe, F, Yu, F, Ohtaki, A, Yamanaka, Y, Noguchi, K, Yohda, M, Odaka, M.
Deposit date:2015-04-17
Release date:2015-11-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074
Proteins, 83, 2015
4Z9F
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BU of 4z9f by Molmil
Halohydrin hydrogen-halide-lyase, HheA
Descriptor: CHLORIDE ION, Halohydrin epoxidase A
Authors:Watanabe, F, Yu, F, Ohtaki, A, Yamanaka, Y, Noguchi, K, Yohda, M, Odaka, M.
Deposit date:2015-04-10
Release date:2015-11-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074
Proteins, 83, 2015
4ZU3
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BU of 4zu3 by Molmil
Halohydrin hydrogen-halide-lyases, HheB
Descriptor: 3-hydroxypentanedinitrile, Halohydrin epoxidase B, MAGNESIUM ION, ...
Authors:Watanabe, F, Yu, F, Ohtaki, A, Yamanaka, Y, Noguchi, K, Yohda, M, Odaka, M.
Deposit date:2015-05-15
Release date:2015-11-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074
Proteins, 83, 2015
7XVX
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BU of 7xvx by Molmil
Neutron crystal structure of human macrophage migration inhibitory factor
Descriptor: Macrophage migration inhibitory factor
Authors:Ezawa, T, Tamada, T, Odaka, M, Matsumura, H.
Deposit date:2022-05-25
Release date:2023-05-31
Method:NEUTRON DIFFRACTION (1.6 Å), X-RAY DIFFRACTION
Cite:Neutron crystal structure of human macrophage migration inhibitory factor
To Be Published
5B19
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BU of 5b19 by Molmil
Picrophilus torridus aspartate racemase
Descriptor: Aspartate racemase, L(+)-TARTARIC ACID
Authors:Aihara, T, Ito, T, Yamanaka, Y, Noguchi, K, Odaka, M, Sekine, M, Homma, H, Yohda, M.
Deposit date:2015-11-30
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Structural and functional characterization of aspartate racemase from the acidothermophilic archaeon Picrophilus torridus
Extremophiles, 20, 2016
5B12
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BU of 5b12 by Molmil
Crystal structure of the B-type halohydrin hydrogen-halide-lyase mutant F71W/Q125T/D199H from Corynebacterium sp. N-1074
Descriptor: CHLORIDE ION, Halohydrin epoxidase B
Authors:Watanabe, F, Yu, F, Ohtaki, A, Yamanaka, Y, Noguchi, K, Odaka, M, Yohda, M.
Deposit date:2015-11-17
Release date:2016-08-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.721 Å)
Cite:Improvement of enantioselectivity of the B-type halohydrin hydrogen-halide-lyase from Corynebacterium sp. N-1074
J.Biosci.Bioeng., 122, 2016
3A1K
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BU of 3a1k by Molmil
Crystal structure of Rhodococcus sp. N771 Amidase
Descriptor: Amidase
Authors:Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M.
Deposit date:2009-04-09
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition
Biochim.Biophys.Acta, 1804, 2010
3A8L
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BU of 3a8l by Molmil
Crystal structure of photo-activation state of Nitrile Hydratase mutant S113A
Descriptor: FE (III) ION, Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta
Authors:Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M.
Deposit date:2009-10-06
Release date:2010-04-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
3A8O
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BU of 3a8o by Molmil
Crystal structure of Nitrile Hydratase complexed with Trimethylacetamide
Descriptor: 2,2-dimethylpropanamide, FE (III) ION, Nitrile hydratase subunit alpha, ...
Authors:Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M.
Deposit date:2009-10-07
Release date:2010-04-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
3A1I
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BU of 3a1i by Molmil
Crystal structure of Rhodococcus sp. N-771 Amidase complexed with Benzamide
Descriptor: Amidase, BENZAMIDE
Authors:Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M.
Deposit date:2009-04-03
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure and Characterization of Amidase from Rhodococcus sp. N-771: Insight into the Molecular Mechanism of Substrate Recognition
Biochim.Biophys.Acta, 2009
3A8H
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BU of 3a8h by Molmil
Crystal structure of Nitrile Hydratase mutant S113A complexed with Trimethylacetamide
Descriptor: 2,2-dimethylpropanamide, FE (III) ION, Nitrile hydratase subunit alpha, ...
Authors:Yamanaka, Y, Hashimoto, K, Ohtaki, A, Noguchi, K, Yohda, M, Odaka, M.
Deposit date:2009-10-06
Release date:2010-04-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase
J.Biol.Inorg.Chem., 15, 2010
2AHJ
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BU of 2ahj by Molmil
NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE
Descriptor: 1,4-DIETHYLENE DIOXIDE, FE (III) ION, NITRIC OXIDE, ...
Authors:Nagashima, S, Nakasako, M, Dohmae, N, Tsujimura, M, Takio, K, Odaka, M, Yohda, M, Kamiya, N, Endo, I.
Deposit date:1997-12-24
Release date:1999-01-27
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms.
Nat.Struct.Biol., 5, 1998
3VQJ
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BU of 3vqj by Molmil
Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase
Descriptor: Carbonyl sulfide hydrolase, SODIUM ION, ZINC ION
Authors:Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M.
Deposit date:2012-03-24
Release date:2013-02-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
3VRK
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BU of 3vrk by Molmil
Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase / Thiocyanate complex
Descriptor: Carbonyl sulfide hydrolase, SODIUM ION, THIOCYANATE ION, ...
Authors:Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M.
Deposit date:2012-04-11
Release date:2013-02-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
3VYH
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BU of 3vyh by Molmil
Crystal structure of aW116R mutant of nitrile hydratase from Pseudonocardia thermophilla
Descriptor: COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta
Authors:Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M.
Deposit date:2012-09-25
Release date:2013-11-13
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
3VYG
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BU of 3vyg by Molmil
Crystal structure of Thiocyanate hydrolase mutant R136W
Descriptor: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
Authors:Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M.
Deposit date:2012-09-25
Release date:2013-11-13
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
2ZCF
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BU of 2zcf by Molmil
Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
Descriptor: FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ...
Authors:Takarada, H, Kawano, Y, Hashimoto, K, Nakayama, H, Ueda, S, Yohda, M, Kamiya, N, Dohmae, N, Maeda, M, Odaka, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-08
Release date:2007-11-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
Biosci.Biotechnol.Biochem., 70, 2006
2DD5
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BU of 2dd5 by Molmil
Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus native holo-enzyme
Descriptor: COBALT (III) ION, SULFATE ION, Thiocyanate hydrolase alpha subunit, ...
Authors:Arakawa, T, Kawano, Y, Kataoka, S, Katayama, Y, Kamiya, N, Yohda, M, Odaka, M.
Deposit date:2006-01-19
Release date:2007-01-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.
J.Mol.Biol., 366, 2007
2DD4
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BU of 2dd4 by Molmil
Thiocyanate hydrolase (SCNase) from Thiobacillus thioparus recombinant apo-enzyme
Descriptor: L(+)-TARTARIC ACID, Thiocyanate hydrolase alpha subunit, Thiocyanate hydrolase beta subunit, ...
Authors:Arakawa, T, Kawano, Y, Kataoka, S, Katayama, Y, Kamiya, N, Yohda, M, Odaka, M.
Deposit date:2006-01-19
Release date:2007-01-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.
J.Mol.Biol., 366, 2007
2DXB
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BU of 2dxb by Molmil
Recombinant thiocyanate hydrolase comprising partially-modified cobalt centers
Descriptor: COBALT (III) ION, PHOSPHATE ION, Thiocyanate hydrolase subunit alpha, ...
Authors:Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M.
Deposit date:2006-08-25
Release date:2007-08-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009

 

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