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2DH9
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BU of 2dh9 by Molmil
Solution structure of the C-terminal RNA binding domain in Heterogeneous nuclear ribonucleoprotein M
Descriptor: Heterogeneous nuclear ribonucleoprotein M
Authors:Ochi, T, Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-23
Release date:2006-09-23
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the C-terminal RNA binding domain in Heterogeneous nuclear ribonucleoprotein M
To be Published
6HXY
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BU of 6hxy by Molmil
Crystal structure of the head and coiled-coil domains of zebrafish CCDC61
Descriptor: Coiled-coil domain-containing protein 61
Authors:Ochi, T, van Breugel, M.
Deposit date:2018-10-18
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:CCDC61/VFL3 Is a Paralog of SAS6 and Promotes Ciliary Functions.
Structure, 28, 2020
6HXT
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BU of 6hxt by Molmil
Crystal structure of the head domain of human CCDC61
Descriptor: Coiled-coil domain-containing protein 61
Authors:Ochi, T, Blundell, T.L, van Breugel, M.
Deposit date:2018-10-18
Release date:2020-04-29
Last modified:2020-06-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:CCDC61/VFL3 Is a Paralog of SAS6 and Promotes Ciliary Functions.
Structure, 28, 2020
3VNN
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BU of 3vnn by Molmil
Crystal Structure of a sub-domain of the nucleotidyltransferase (adenylation) domain of human DNA ligase IV
Descriptor: DNA ligase 4
Authors:Ochi, T, Wu, Q, Chirgadze, D.Y, Grossmann, J.G, Bolanos-Garcia, V.M, Blundell, T.L.
Deposit date:2012-01-17
Release date:2012-06-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.903 Å)
Cite:Structural insights into the role of domain flexibility in human DNA ligase IV
Structure, 20, 2012
3W1G
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BU of 3w1g by Molmil
Crystal Structure of Human DNA ligase IV-Artemis Complex (Native)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Artemis-derived peptide, DNA ligase 4, ...
Authors:Ochi, T, Blundell, T.L.
Deposit date:2012-11-15
Release date:2013-04-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of the catalytic region of DNA ligase IV in complex with an artemis fragment sheds light on double-strand break repair
Structure, 21, 2013
3W1B
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BU of 3w1b by Molmil
Crystal Structure of Human DNA ligase IV-Artemis Complex (Mercury Derivative)
Descriptor: ADENOSINE MONOPHOSPHATE, Artemis-derived peptide, DNA ligase 4, ...
Authors:Ochi, T, Blundell, T.L.
Deposit date:2012-11-14
Release date:2013-04-03
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the catalytic region of DNA ligase IV in complex with an artemis fragment sheds light on double-strand break repair
Structure, 21, 2013
3WTD
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BU of 3wtd by Molmil
Structure of PAXX
Descriptor: Uncharacterized protein C9orf142
Authors:Ochi, T, Blundell, T.L.
Deposit date:2014-04-09
Release date:2015-01-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:DNA repair. PAXX, a paralog of XRCC4 and XLF, interacts with Ku to promote DNA double-strand break repair.
Science, 347, 2015
3WTF
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BU of 3wtf by Molmil
Structure of PAXX
Descriptor: Uncharacterized protein C9orf142
Authors:Ochi, T, Blundell, T.L.
Deposit date:2014-04-09
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.451 Å)
Cite:DNA repair. PAXX, a paralog of XRCC4 and XLF, interacts with Ku to promote DNA double-strand break repair.
Science, 347, 2015
8P26
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BU of 8p26 by Molmil
Crystal structure of Arabidopsis thaliana PAXX
Descriptor: U2 small nuclear ribonucleoprotein auxiliary factor-like protein
Authors:Ochi, T.
Deposit date:2023-05-15
Release date:2023-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Plant PAXX has an XLF-like function and stimulates DNA end joining by the Ku-DNA ligase IV/XRCC4 complex.
Plant J., 116, 2023
6HXV
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BU of 6hxv by Molmil
Crystal structure of the head and coiled-coil domains of zebrafish CCDC61 (F129E/D130A)
Descriptor: Coiled-coil domain-containing protein 61
Authors:Barnabas, D, Ochi, T, van Breugel, M.
Deposit date:2018-10-18
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:CCDC61/VFL3 Is a Paralog of SAS6 and Promotes Ciliary Functions.
Structure, 28, 2020
3W5O
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BU of 3w5o by Molmil
Crystal Structure of Human DNA ligase IV
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA ligase 4, SULFATE ION
Authors:Gu, X, Ochi, T, Blundell, T.L.
Deposit date:2013-02-02
Release date:2013-04-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Structure of the catalytic region of DNA ligase IV in complex with an artemis fragment sheds light on double-strand break repair
Structure, 21, 2013
3W03
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BU of 3w03 by Molmil
XLF-XRCC4 complex
Descriptor: DNA repair protein XRCC4, Non-homologous end-joining factor 1
Authors:Wu, Q, Ochi, T, Matak-Vinkovic, D, Robinson, C.V, Chirgadze, D.Y, Blundell, T.L.
Deposit date:2012-10-17
Release date:2012-11-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (8.492 Å)
Cite:Non-homologous end-joining partners in a helical dance: structural studies of XLF-XRCC4 interactions
Biochem.Soc.Trans., 39, 2011
4Y18
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BU of 4y18 by Molmil
Structure of BRCA1 BRCT domains in complex with Abraxas double phosphorylated peptide
Descriptor: BRCA1-A complex subunit Abraxas, Breast cancer type 1 susceptibility protein
Authors:Wu, Q, Blundell, T.L.
Deposit date:2015-02-06
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of BRCA1-BRCT/Abraxas Complex Reveals Phosphorylation-Dependent BRCT Dimerization at DNA Damage Sites.
Mol.Cell, 61, 2016
4Y2G
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BU of 4y2g by Molmil
Structure of BRCA1 BRCT domains in complex with Abraxas single phosphorylated peptide
Descriptor: BRCA1-A complex subunit Abraxas, Breast cancer type 1 susceptibility protein
Authors:Wu, Q, Blundell, T.L.
Deposit date:2015-02-09
Release date:2016-01-27
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of BRCA1-BRCT/Abraxas Complex Reveals Phosphorylation-Dependent BRCT Dimerization at DNA Damage Sites.
Mol.Cell, 61, 2016
3THC
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BU of 3thc by Molmil
Crystal structure of human beta-galactosidase in complex with galactose
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
Authors:Ohto, U, Shimizu, T.
Deposit date:2011-08-18
Release date:2011-12-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human beta-galactosidase: structural basis of Gm1 gangliosidosis and morquio B diseases
J.Biol.Chem., 287, 2012
3THD
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BU of 3thd by Molmil
Crystal structure of human beta-galactosidase in complex with 1-deoxygalactonojirimycin
Descriptor: (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ohto, U, Shimizu, T.
Deposit date:2011-08-18
Release date:2011-12-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystal structure of human beta-galactosidase: structural basis of Gm1 gangliosidosis and morquio B diseases
J.Biol.Chem., 287, 2012

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PDB entries from 2024-03-27

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