Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2V6X
DownloadVisualize
BU of 2v6x by Molmil
Stractural insight into the interaction between ESCRT-III and Vps4
Descriptor: DOA4-INDEPENDENT DEGRADATION PROTEIN 4, SULFATE ION, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4
Authors:Obita, T, Perisic, O, Ghazi-Tabatabai, S, Saksena, S, Emr, S.D, Williams, R.L.
Deposit date:2007-07-23
Release date:2007-10-16
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural Basis for Selective Recognition of Escrt-III by the Aaa ATPase Vps4
Nature, 449, 2007
2V6Y
DownloadVisualize
BU of 2v6y by Molmil
Structure of the MIT domain from a S. solfataricus Vps4-like ATPase
Descriptor: AAA FAMILY ATPASE, P60 KATANIN, S,R MESO-TARTARIC ACID
Authors:Obita, T, Saksena, S, Ghazi-Tabatabai, S, Gill, D.J, Perisic, O, Emr, S.D, Williams, R.L.
Deposit date:2007-07-24
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Selective Recognition of Escrt-III by the Aaa ATPase Vps4
Nature, 449, 2007
1IVM
DownloadVisualize
BU of 1ivm by Molmil
Solution structure of mouse lysozyme M
Descriptor: lysozyme M
Authors:Ueda, T, Obita, T, Imoto, T.
Deposit date:2002-03-27
Release date:2002-05-08
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure and activity of mouse lysozyme M
CELL.MOL.LIFE SCI., 60, 2003
5X2L
DownloadVisualize
BU of 5x2l by Molmil
Crystal Structure of Human Serine Racemase
Descriptor: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Serine racemase
Authors:Obita, T, Matsumoto, K, Mori, H, Toyooka, N, Mizuguchi, M.
Deposit date:2017-02-01
Release date:2018-01-31
Last modified:2021-02-24
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:Design, synthesis, and evaluation of novel inhibitors for wild-type human serine racemase.
Bioorg. Med. Chem. Lett., 2017
5AON
DownloadVisualize
BU of 5aon by Molmil
Crystal structure of the conserved N-terminal domain of Pex14 from Trypanosoma brucei
Descriptor: PEROXIN 14, SULFATE ION
Authors:Obita, T, Sugawara, Y, Mizuguchi, M, Watanabe, Y, Kawaguchi, K, Imanaka, T.
Deposit date:2015-09-11
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.646 Å)
Cite:Characterization of the Interaction between Trypanosoma Brucei Pex5P and its Receptor Pex14P.
FEBS Lett., 590, 2016
7X4O
DownloadVisualize
BU of 7x4o by Molmil
Crystal structure of Vps17p PX from S. cerevisiae (Space)
Descriptor: SULFATE ION, Vacuolar protein sorting-associated protein 17
Authors:Maita, N, Kohda, D, Obita, T.
Deposit date:2022-03-03
Release date:2022-05-18
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of the PX domain of Vps17p from Saccharomyces cerevisiae.
Acta Crystallogr.,Sect.F, 78, 2022
2V1T
DownloadVisualize
BU of 2v1t by Molmil
CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX
Descriptor: ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG
Authors:Obita, T, Igura, M, Ose, T, Endo, T, Maenaka, K, Kohda, D.
Deposit date:2007-05-29
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States.
Embo J., 26, 2007
2V1S
DownloadVisualize
BU of 2v1s by Molmil
CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX
Descriptor: ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG
Authors:Obita, T, Igura, M, Ose, T, Endo, T, Maenaka, K, Kohda, D.
Deposit date:2007-05-29
Release date:2007-06-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States.
Embo J., 26, 2007
5GPY
DownloadVisualize
BU of 5gpy by Molmil
Crystal structure of the human TFIIE complex
Descriptor: General transcription factor IIE subunit 1, Transcription initiation factor IIE subunit beta, ZINC ION
Authors:Obita, T, Miwa, K, Kojima, R, Ohkuma, Y, Tamura, Y, Mizuguchi, M.
Deposit date:2016-08-05
Release date:2016-11-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Human General Transcription Factor TFIIE at Atomic Resolution
J.Mol.Biol., 428, 2016
2W2U
DownloadVisualize
BU of 2w2u by Molmil
STRUCTURAL INSIGHT INTO THE INTERACTION BETWEEN ARCHAEAL ESCRT-III AND AAA-ATPASE
Descriptor: CONSERVED ARCHAEAL PROTEIN, HYPOTHETICAL P60 KATANIN
Authors:Obita, T, Samson, R.Y, Perisic, O, Freund, S.M, Bell, S.D, Williams, R.L.
Deposit date:2008-11-04
Release date:2009-07-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Role for the Escrt System in Cell Division in Archaea.
Science, 322, 2008
8I75
DownloadVisualize
BU of 8i75 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I76
DownloadVisualize
BU of 8i76 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0 without glycerol
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.381 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
8I74
DownloadVisualize
BU of 8i74 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 8.5
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structures of decarboxylated osteocalcin and implications for the interaction with its receptor
To Be Published
4BWS
DownloadVisualize
BU of 4bws by Molmil
Crystal structure of the heterotrimer of PQBP1, U5-15kD and U5-52kD.
Descriptor: CD2 ANTIGEN CYTOPLASMIC TAIL-BINDING PROTEIN 2, POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
4BWQ
DownloadVisualize
BU of 4bwq by Molmil
Crystal structure of U5-15kD in a complex with PQBP1
Descriptor: POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
5H0Z
DownloadVisualize
BU of 5h0z by Molmil
Crystal structure of P113A mutated human transthyretin
Descriptor: CHLORIDE ION, SULFATE ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.735 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5H0V
DownloadVisualize
BU of 5h0v by Molmil
Crystal structure of H88A mutated human transthyretin
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5H0X
DownloadVisualize
BU of 5h0x by Molmil
Crystal structure of H88S mutated human transthyretin
Descriptor: Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.573 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5H0W
DownloadVisualize
BU of 5h0w by Molmil
Crystal structure of H88F mutated human transthyretin
Descriptor: SULFATE ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5H0Y
DownloadVisualize
BU of 5h0y by Molmil
Crystal structure of H88Y mutated human transthyretin
Descriptor: CHLORIDE ION, SULFATE ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
4CDO
DownloadVisualize
BU of 4cdo by Molmil
Crystal structure of PQBP1 bound to spliceosomal U5-15kD
Descriptor: THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Nabeshima, Y, Okazawa, H.
Deposit date:2013-11-05
Release date:2014-04-30
Last modified:2014-05-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
7WL6
DownloadVisualize
BU of 7wl6 by Molmil
Crystal structure of I73L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Nakagawa, M, Obita, T, Mizuguchi, M.
Deposit date:2022-01-12
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.418007 Å)
Cite:The hydrophobic residue Leu73 is crucial for the high stability and low aggregation properties of murine transthyretin.
Biochem.J., 479, 2022
5FVK
DownloadVisualize
BU of 5fvk by Molmil
Crystal structure of Vps4-Vfa1 complex from S.cerevisiae at 1.66 A resolution.
Descriptor: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4, VPS4-ASSOCIATED PROTEIN 1
Authors:Kojima, R, Obita, T, Onoue, K, Mizuguchi, M.
Deposit date:2016-02-09
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.658 Å)
Cite:Structural Fine-Tuning of Mit Interacting Motif 2 (Mim2) and Allosteric Regulation of Escrt-III by Vps4 in Yeast.
J.Mol.Biol., 428, 2016
5FVL
DownloadVisualize
BU of 5fvl by Molmil
Crystal structure of Vps4-Vps20 complex from S.cerevisiae
Descriptor: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4
Authors:Kojima, R, Obita, T, Onoue, K, Mizuguchi, M.
Deposit date:2016-02-09
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.973 Å)
Cite:Structural Fine-Tuning of Mit Interacting Motif 2 (Mim2) and Allosteric Regulation of Escrt-III by Vps4 in Yeast.
J.Mol.Biol., 428, 2016
4A5Z
DownloadVisualize
BU of 4a5z by Molmil
Structures of MITD1
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, MIT DOMAIN-CONTAINING PROTEIN 1
Authors:Hadders, M.A, Agromayor, M, Caballe, A, Obita, T, Perisic, O, Williams, R.L, Martin-Serrano, J.
Deposit date:2011-10-30
Release date:2012-11-14
Last modified:2013-11-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Escrt-III Binding Protein Mitd1 is Involved in Cytokinesis and Has an Unanticipated Pld Fold that Binds Membranes.
Proc.Natl.Acad.Sci.USA, 109, 2012

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon