Author results

5LI2
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BACTERIOPHAGE PHI812K1-420 TAIL SHEATH AND TAIL TUBE PROTEIN IN NATIVE TAIL
Descriptor:tail sheath protein, Phage-like element PBSX protein XkdM
Authors:Novacek, J., Siborova, M., Benesik, M., Pantucek, R., Doskar, J., Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-19
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LI4
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BACTERIOPHAGE PHI812K1-420 TAIL SHEATH PROTEIN AFTER CONTRACTION
Descriptor:tail sheath protein
Authors:Novacek, J., Siborova, M., Benesik, M., Pantucek, R., Doskar, J., Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-19
Last modified:2018-05-23
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LII
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BACTERIOPHAGE PHI812K1-420 MAJOR CAPSID PROTEIN
Descriptor:Major capsid protein
Authors:Novacek, J., Siborova, M., Benesik, M., Pantucek, R., Doskar, J., Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-19
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5LIJ
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POLYALANINE CHAIN BUILT IN BACTERIOPHAGE PHI812K1-420 CEMENT PROTEIN DENSITY MAP
Descriptor:polyalanine chain built in bacteriophage phi812K1-420 cement protein density map
Authors:Novacek, J., Siborova, M., Benesik, M., Pantucek, R., Doskar, J., Plevka, P.
Deposit date:2016-07-14
Release date:2017-07-26
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5O1Q
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LYSF1 SH3B DOMAIN STRUCTURE
Descriptor:sh3b domain
Authors:Benesik, M., Novacek, J., Janda, L., Dopitova, R., Pernisova, M., Melkova, K., Tisakova, L., Doskar, J., Zidek, L., Hejatko, J., Pantucek, R.
Deposit date:2017-05-19
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity.
Virus Genes, 54, 2018
2KRC
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SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF BACILLUS SUBTILIS DELTA SUBUNIT OF RNA POLYMERASE
Descriptor:DNA-directed RNA polymerase subunit delta
Authors:Motackova, V., Sanderova, H., Zidek, L., Novacek, J., Padrta, P., Svenkova, A., Jonak, J., Krasny, L., Sklenar, V.
Deposit date:2009-12-16
Release date:2010-04-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs
Proteins, 78, 2010
2M4K
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SOLUTION STRUCTURE OF THE DELTA SUBUNIT OF RNA POLYMERASE FROM BACILLUS SUBTILIS
Descriptor:DNA-directed RNA polymerase subunit delta
Authors:Papouskova, V., Novacek, J., Kaderavek, P., Zidek, L., Rabatinova, A., Sanderova, H., Krasny, L., Sklenar, V.
Deposit date:2013-02-07
Release date:2013-10-09
Last modified:2016-10-12
Method:SOLUTION NMR
Cite:Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis.
Chembiochem, 14, 2013
5A8F
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STRUCTURE AND GENOME RELEASE MECHANISM OF HUMAN CARDIOVIRUS SAFFOLD VIRUS-3
Descriptor:HUMAN SAFFOLD VIRUS-3 VP1, GENOME POLYPHUMAN SAFFOLD VIRUS-3 VP3 PROTEIN, HUMAN SAFFOLD VIRUS-3 VP2
Authors:Mullapudi, E., Novacek, J., Palkova, L., Kulich, P., Lindberg, M., vanKuppeveld, F.J.M., Plevka, P.
Deposit date:2015-07-15
Release date:2016-06-08
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (10.6 Å)
Cite:Structure and Genome Release Mechanism of Human Cardiovirus Saffold Virus-3.
J.Virol., 90, 2016
5G51
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HIGH RESOLUTION STRUCTURE OF THE PART OF VP3 PROTEIN OF DEFORMED WING VIRUS FORMING P-DOMAIN
Descriptor:DWV-VP3-P-DOMAIN
Authors:Skubnik, K., Novacek, J., Fuzik, T., Pridal, A., Paxton, R., Plevka, P.
Deposit date:2016-05-18
Release date:2017-03-22
Last modified:2017-03-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5G52
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CRYSTALLOGRAPHIC STRUCTURE OF FULL PARTICLE OF DEFORMED WING VIRUS
Descriptor:VP1, VP2, VP3, ...
Authors:Skubnik, K., Novacek, J., Fuzik, T., Pridal, A., Paxton, R., Plevka, P.
Deposit date:2016-05-18
Release date:2017-03-22
Last modified:2017-03-29
Method:X-RAY DIFFRACTION (3.802 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5L7Q
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STRUCTURE OF DEFORMED WING VIRUS, A HONEYBEE PATHOGEN
Descriptor:VP1, vp2, vp3
Authors:Skubnik, K., Novacek, J., Fuzik, T., Pridal, A., Paxton, R., Plevka, P.
Deposit date:2016-06-03
Release date:2017-03-29
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5L8Q
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STRUCTURE OF DEFORMED WING VIRUS, A HONEYBEE PATHOGEN
Descriptor:VP1, VP2, VP3, ...
Authors:Skubnik, K., Novacek, J., Fuzik, T., Pridal, A., Paxton, R., Plevka, P.
Deposit date:2016-06-08
Release date:2017-03-29
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MLC
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CRYO-EM STRUCTURE OF THE SPINACH CHLOROPLAST RIBOSOME REVEALS THE LOCATION OF PLASTID-SPECIFIC RIBOSOMAL PROTEINS AND EXTENSIONS
Descriptor:23S ribosomal RNA, chloroplastic, 5S ribosomal RNA, ...
Authors:Graf, M., Arenz, S., Huter, P., Doenhoefer, A., Novacek, J., Wilson, D.N.
Deposit date:2016-12-06
Release date:2016-12-28
Last modified:2018-10-17
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions.
Nucleic Acids Res., 45, 2017
5MUP
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STRUCTURE OF DEFORMED WING VIRUS, A HONEYBEE PATHOGEN
Descriptor:VP1, VP2, VP3, ...
Authors:Skubnik, K., Novacek, J., Fuzik, T., Pridal, A., Paxton, R., Plevka, P.
Deposit date:2017-01-13
Release date:2017-04-05
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MV5
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STRUCTURE OF DEFORMED WING VIRUS, A HONEYBEE PATHOGEN
Descriptor:VP1, VP2, VP3, ...
Authors:Skubnik, K., Novacek, J., Fuzik, T., Pridal, A., Paxton, R., Plevka, P.
Deposit date:2017-01-15
Release date:2017-04-05
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MV6
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STRUCTURE OF DEFORMED WING VIRUS, A HONEYBEE PATHOGEN
Descriptor:VP1, VP2, VP3, ...
Authors:Skubnik, K., Novacek, J., Fuzik, T., Pridal, A., Paxton, R., Plevka, P.
Deposit date:2017-01-15
Release date:2017-04-05
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6HA1
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CRYO-EM STRUCTURE OF A 70S BACILLUS SUBTILIS RIBOSOME TRANSLATING THE ERMD LEADER PEPTIDE IN COMPLEX WITH TELITHROMYCIN
Descriptor:23S ribosomal RNA, 5S ribosomal RNA, 50S ribosomal protein L2, ...
Authors:Crowe-McAuliffe, C., Graf, M., Huter, P., Abdelshahid, M., Novacek, J., Wilson, D.N.
Deposit date:2018-08-07
Release date:2018-08-29
Last modified:2018-09-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6HA8
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CRYO-EM STRUCTURE OF THE ABCF PROTEIN VMLR BOUND TO THE BACILLUS SUBTILIS RIBOSOME
Descriptor:23S rRNA, 5S rRNA, 50S ribosomal protein L2, ...
Authors:Crowe-McAuliffe, C., Graf, M., Huter, P., Abdelshahid, M., Novacek, J., Wilson, D.N.
Deposit date:2018-08-07
Release date:2018-08-29
Last modified:2018-09-12
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6HXX
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POTATO VIRUS Y
Descriptor:Coat protein, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Authors:Podobnik, M., Kezar, A., Novacek, J., Polak, M.
Deposit date:2018-10-18
Release date:2019-08-07
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
6HXZ
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VIRUS-LIKE PARTICLES BASED ON POTATO VIRUS Y
Descriptor:Polyprotein
Authors:Podobnik, M., Kezar, A., Novacek, J.
Deposit date:2018-10-18
Release date:2019-08-07
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
6S47
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SACCHAROMYCES CEREVISIAE 80S RIBOSOME BOUND WITH ABCF PROTEIN NEW1
Descriptor:28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, ...
Authors:Kasari, V., Pochopien, A.A., Margus, T., Murina, V., Turnbull, K., Zhou, Y., Nissan, T., Graf, M., Novacek, J., Atkinson, G.C., Johansson, M.J.O., Wilson, D.N., Hauryliuk, V.
Deposit date:2019-06-26
Release date:2019-07-24
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling.
Nucleic Acids Res., 2019
5CFC
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CRYSTAL STRUCTURE OF HUMAN CARDIOVIRUS SAFV-3
Descriptor:VP1, VP3, VP2, ...
Authors:Mullapudi, E., Plevka, P.
Deposit date:2015-07-08
Release date:2016-06-15
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
J.Virol., 90, 2016
5CFD
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CRYSTAL STRUCTURE OF DTT TREATED HUMAN CARDIOVIRUS SAFV-3
Descriptor:VP1, VP3, VP2, ...
Authors:Mullapudi, E., Plevka, P.
Deposit date:2015-07-08
Release date:2016-06-15
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
J.Virol., 90, 2016
5WOT
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NMR SOLUTION STRUCTURE OF A-LYTIC PROTEASE USING TWO 4D-SPECTRA
Descriptor:Alpha-lytic protease
Authors:Evangelidis, T., Nerli, S., Sgourakis, N.G., Tripsianes, K.
Deposit date:2017-08-03
Release date:2018-02-07
Method:SOLUTION NMR
Cite:Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.
Nat Commun, 9, 2018
5WOX
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NMR SOLUTION STRUCTURE OF KANY PROTEIN (MS6282) USING TWO 4D-SPECTRA
Descriptor:Uncharacterized protein
Authors:Evangelidis, T., Nerli, S., Sgourakis, N.G., Tripsianes, K.
Deposit date:2017-08-03
Release date:2018-02-07
Method:SOLUTION NMR
Cite:Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.
Nat Commun, 9, 2018
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