Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5KZD
DownloadVisualize
BU of 5kzd by Molmil
N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus with bound sialic acid alditol
Descriptor: (2~{S},4~{S},5~{R},6~{R},7~{S},8~{R})-5-acetamido-2,4,6,7,8,9-hexakis(oxidanyl)nonanoic acid, N-acetylneuraminate lyase
Authors:North, R.A, Watson, A.J.A, Pearce, F.G, Muscroft-Taylor, A.C, Friemann, R, Fairbanks, A.J, Dobson, R.C.J.
Deposit date:2016-07-25
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Structure and inhibition of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus.
FEBS Lett., 590, 2016
6H4E
DownloadVisualize
BU of 6h4e by Molmil
Proteus mirabilis N-acetylneuraminate lyase
Descriptor: Putative N-acetylneuraminate lyase, SULFATE ION
Authors:North, R.A, Garcia-Bonete, M.J, Goyal, P, Katona, G, Dobson, R.C.J, Friemann, R.
Deposit date:2018-07-21
Release date:2019-06-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.561 Å)
Cite:The structure of Proteus mirabilis N-acetylneuraminate lyase reveals an intermolecular disulphide bond
To Be Published
5KZE
DownloadVisualize
BU of 5kze by Molmil
N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus
Descriptor: GLYCEROL, N-acetylneuraminate lyase, SULFATE ION
Authors:North, R.A, Watson, A.J.A, Pearce, F.G, Muscroft-Taylor, A.C, Friemann, R, Fairbanks, A.J, Dobson, R.C.J.
Deposit date:2016-07-25
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure and inhibition of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus.
FEBS Lett., 590, 2016
7QHA
DownloadVisualize
BU of 7qha by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in amphipol
Descriptor: Megabody c7HopQ, Putative TRAP-type C4-dicarboxylate transport system, large permease component, ...
Authors:North, R.A, Davies, J.S, Morado, D, Dobson, R.C.J.
Deposit date:2021-12-11
Release date:2022-12-21
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter.
Nat Commun, 14, 2023
8THI
DownloadVisualize
BU of 8thi by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (parallel dimer)
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, SODIUM ION, Sialic acid TRAP transporter permease protein SiaT
Authors:Davies, J.S, Currie, M.C, Dobson, R.C.J, North, R.A.
Deposit date:2023-07-16
Release date:2023-11-22
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter.
Elife, 12, 2024
8THJ
DownloadVisualize
BU of 8thj by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Haemophilus influenzae (antiparallel dimer)
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, PHOSPHATIDYLETHANOLAMINE, SODIUM ION, ...
Authors:Davies, J.S, Currie, M.C, Dobson, R.C.J, North, R.A.
Deposit date:2023-07-16
Release date:2023-11-22
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter.
Elife, 12, 2024
8B01
DownloadVisualize
BU of 8b01 by Molmil
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Descriptor: DECANE, DOCOSANE, HEXANE, ...
Authors:Davies, J.S, North, R.A, Dobson, R.C.J.
Deposit date:2022-09-06
Release date:2023-03-15
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter.
Nat Commun, 14, 2023
7T3E
DownloadVisualize
BU of 7t3e by Molmil
Structure of the sialic acid bound Tripartite ATP-independent Periplasmic (TRAP) periplasmic component SiaP from Photobacterium profundum
Descriptor: N-acetyl-beta-neuraminic acid, SULFATE ION, TRAP-type C4-dicarboxylate transport system, ...
Authors:Davies, J.S, Currie, M.J, North, R.A, Dobson, R.C.J.
Deposit date:2021-12-07
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter.
Nat Commun, 14, 2023
6Q26
DownloadVisualize
BU of 6q26 by Molmil
N-Acetylmannosamine kinase from Staphylococcus aureus
Descriptor: Glucokinase
Authors:Coombes, D, North, R.A, Dobson, R.C.J.
Deposit date:2019-08-07
Release date:2020-01-22
Last modified:2020-03-18
Method:X-RAY DIFFRACTION (2.328 Å)
Cite:The basis for non-canonical ROK family function in theN-acetylmannosamine kinase from the pathogenStaphylococcus aureus.
J.Biol.Chem., 295, 2020
5NVA
DownloadVisualize
BU of 5nva by Molmil
Substrate-bound outward-open state of a Na+-coupled sialic acid symporter reveals a novel Na+-site
Descriptor: N-acetyl-beta-neuraminic acid, Putative sodium:solute symporter, SODIUM ION
Authors:Wahlgren, W.Y, North, R.A, Dunevall, E, Goyal, P, Grabe, M, Dobson, R, Abramson, J, Ramaswamy, S, Friemann, R.
Deposit date:2017-05-03
Release date:2018-04-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Substrate-bound outward-open structure of a Na+-coupled sialic acid symporter reveals a new Na+site.
Nat Commun, 9, 2018
5NV9
DownloadVisualize
BU of 5nv9 by Molmil
Substrate-bound outward-open state of a Na+-coupled sialic acid symporter reveals a novel Na+-site
Descriptor: DODECYL-BETA-D-MALTOSIDE, N-acetyl-beta-neuraminic acid, PHOSPHATE ION, ...
Authors:Wahlgren, W.Y, North, R.A, Dunevall, E, Paz, A, Goyal, P, Bisignano, P, Grabe, M, Dobson, R, Abramson, J, Ramaswamy, S, Friemann, R.
Deposit date:2017-05-03
Release date:2018-04-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Substrate-bound outward-open structure of a Na+-coupled sialic acid symporter reveals a new Na+site.
Nat Commun, 9, 2018
6N2A
DownloadVisualize
BU of 6n2a by Molmil
Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 1)
Descriptor: Diaminopimelate decarboxylase 1, chloroplastic, LYSINE, ...
Authors:Crowther, J.M, Dobson, R.C.J.
Deposit date:2018-11-12
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Active site gating provides stereochemical control for meso-diaminopimelate decarboxylase
To Be Published
6N2F
DownloadVisualize
BU of 6n2f by Molmil
Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 2)
Descriptor: Diaminopimelate decarboxylase 2, chloroplastic, LYSINE, ...
Authors:Crowther, J.M, Dobson, R.C.J.
Deposit date:2018-11-12
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Active site gating provides stereochemical control for meso-diaminopimelate decarboxylase
To Be Published
6Q27
DownloadVisualize
BU of 6q27 by Molmil
N-acetylmannosamine kinase with N-acetylmannosamine from Staphylococcus aureus
Descriptor: 2-acetamido-2-deoxy-alpha-D-mannopyranose, Glucokinase
Authors:Coombes, D, Horne, C.R, Davies, J.S, Dobson, R.C.J.
Deposit date:2019-08-07
Release date:2020-01-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The basis for non-canonical ROK family function in theN-acetylmannosamine kinase from the pathogenStaphylococcus aureus.
J.Biol.Chem., 295, 2020
5NCK
DownloadVisualize
BU of 5nck by Molmil
The Crystal Structure of N-acetylmannosamine kinase in Fusobacterium nucleatum
Descriptor: N-acetylmannosamine kinase
Authors:Caing-Carlsson, R, Sharma, A, Friemann, R, Ramaswamy, S.
Deposit date:2017-03-06
Release date:2017-06-28
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structure of N-acetylmannosamine kinase from Fusobacterium nucleatum.
Acta Crystallogr F Struct Biol Commun, 73, 2017
7MFN
DownloadVisualize
BU of 7mfn by Molmil
N-Acetylmannosamine-6-phosphate 2-epimerase E180A from Staphylococcus aureus (strain MRSA USA300)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ...
Authors:Currie, M.J, Dobson, R.C.J.
Deposit date:2021-04-10
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:N-acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization.
J.Biol.Chem., 297, 2021
7MFS
DownloadVisualize
BU of 7mfs by Molmil
N-Acetylmannosamine-6-phosphate 2-epimerase from Staphylococcus aureus (strain MRSA USA300) with substrate and product bound
Descriptor: CHLORIDE ION, N-acetyl-D-glucosamine-6-phosphate, N-acetylmannosamine-6-phosphate, ...
Authors:Currie, M.J, Dobson, R.C.J.
Deposit date:2021-04-11
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:N-acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization.
J.Biol.Chem., 297, 2021
7MQT
DownloadVisualize
BU of 7mqt by Molmil
N-Acetylmannosamine-6-phosphate 2-epimerase from Staphylococcus aureus (strain MRSA USA300) with 5-deoxy substrate bound
Descriptor: 2-acetamido-2,5-dideoxy-6-O-phosphono-D-lyxo-hexose, CHLORIDE ION, CITRIC ACID, ...
Authors:Currie, M.J, Dobson, R.C.J.
Deposit date:2021-05-06
Release date:2022-04-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:N-acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization.
J.Biol.Chem., 297, 2021
6Q28
DownloadVisualize
BU of 6q28 by Molmil
Metal ROK rebel: Characterisation of N-acetylmannosamine kinase from the pathogen Staphylococcus aureus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-acetylmannosamine kinase
Authors:Coombes, D, Horne, C.R, Dobson, R.C.J.
Deposit date:2019-08-07
Release date:2020-01-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The basis for non-canonical ROK family function in theN-acetylmannosamine kinase from the pathogenStaphylococcus aureus.
J.Biol.Chem., 295, 2020
5ZJP
DownloadVisualize
BU of 5zjp by Molmil
Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae with N-acetylglucosamine-6-phosphate
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-acetyl-D-glucosamine-6-phosphate, ...
Authors:Manjunath, L, Guntupalli, S.R.
Deposit date:2018-03-21
Release date:2018-12-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZJN
DownloadVisualize
BU of 5zjn by Molmil
Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae with N-acetylmannosamine-6-phosphate
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-acetylmannosamine-6-phosphate, ...
Authors:Manjunath, L, Guntupalli, S.
Deposit date:2018-03-21
Release date:2018-09-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZJB
DownloadVisualize
BU of 5zjb by Molmil
Structure of N-acetylmannosamine-6-phosphate-2-epimerase from Vibrio cholerae
Descriptor: DI(HYDROXYETHYL)ETHER, MALONATE ION, Putative N-acetylmannosamine-6-phosphate 2-epimerase
Authors:Manjunath, L, Guntupalli, S.
Deposit date:2018-03-19
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZKN
DownloadVisualize
BU of 5zkn by Molmil
Structure of N-acetylmannosamine-6-phosphate 2-epimerase from Fusobacterium nucleatum
Descriptor: CHLORIDE ION, Putative N-acetylmannosamine-6-phosphate 2-epimerase
Authors:Manjunath, L.
Deposit date:2018-03-24
Release date:2018-09-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.205 Å)
Cite:Crystal structures and kinetic analyses of N-acetylmannosamine-6-phosphate 2-epimerases from Fusobacterium nucleatum and Vibrio cholerae
Acta Crystallogr F Struct Biol Commun, 74, 2018
6VVA
DownloadVisualize
BU of 6vva by Molmil
N-Acetylmannosamine-6-phosphate 2-epimerase from Staphylococcus aureus (strain MRSA USA300)
Descriptor: CHLORIDE ION, CITRIC ACID, N-acetylmannosamine-6-phosphate 2-epimerase
Authors:Renwick, R.C.J, Currie, M.J.
Deposit date:2020-02-17
Release date:2021-02-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:N-acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization.
J.Biol.Chem., 297, 2021
6WG7
DownloadVisualize
BU of 6wg7 by Molmil
Coordinates of NanR dimer fitted in Hexameric NanR-DNA hetero-complex cryo-EM map
Descriptor: DNA (35-MER), HTH-type transcriptional repressor NanR
Authors:Hariprasad, V, Horne, C, Santosh, P, Amy, H, Emre, B, Rachel, N, Michael, G, Georg, R, Borries, D, Renwick, D.
Deposit date:2020-04-05
Release date:2021-03-10
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Mechanism of NanR gene repression and allosteric induction of bacterial sialic acid metabolism.
Nat Commun, 12, 2021

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon