Author results

1EYT
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CRYSTAL STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM THERMOCHROMATIUM TEPIDUM
Descriptor:HIGH-POTENTIAL IRON-SULFUR PROTEIN, IRON/SULFUR CLUSTER
Authors:Nogi, T., Fathir, I., Kobayashi, M., Nozawa, T., Miki, K.
Deposit date:2000-05-08
Release date:2000-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer.
Proc.Natl.Acad.Sci.USA, 97, 2000
1EYS
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CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM
Descriptor:PHOTOSYNTHETIC REACTION CENTER, PROTOPORPHYRIN IX CONTAINING FE, B-2-OCTYLGLUCOSIDE, ...
Authors:Nogi, T., Fathir, I., Kobayashi, M., Nozawa, T., Miki, K.
Deposit date:2000-05-08
Release date:2000-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer.
Proc.Natl.Acad.Sci.USA, 97, 2000
1IU1
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CRYSTAL STRUCTURE OF HUMAN GAMMA1-ADAPTIN EAR DOMAIN
Descriptor:gamma1-adaptin
Authors:Nogi, T., Shiba, Y., Kawasaki, M., Shiba, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Takatsu, H., Nakayama, K., Wakatsuki, S.
Deposit date:2002-02-19
Release date:2002-07-10
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain.
Nat.Struct.Biol., 9, 2002
2ZPK
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CRYSTAL STRUCTURE OF P20.1 FAB FRAGMENT IN COMPLEX WITH ITS ANTIGEN PEPTIDE
Descriptor:IgG1-lambda P20.1 Fab (light chain), IgG1-lambda P20.1 Fab (heavy chain), Proteinase-activated receptor 4, ...
Authors:Nogi, T., Sanagawa, T., Takagi, J.
Deposit date:2008-07-16
Release date:2008-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification
Protein Sci., 17, 2008
3AL8
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PLEXIN A2 / SEMAPHORIN 6A COMPLEX
Descriptor:Semaphorin-6A, Plexin-A2, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Nogi, T., Yasui, N., Mihara, E., Takagi, J.
Deposit date:2010-07-28
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
3AL9
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MOUSE PLEXIN A2 EXTRACELLULAR DOMAIN
Descriptor:Plexin-A2, 1,2-ETHANEDIOL, N-ACETYL-D-GLUCOSAMINE
Authors:Nogi, T., Yasui, N., Mihara, E., Takagi, J.
Deposit date:2010-07-28
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
2DDU
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CRYSTAL STRUCTURE OF THE THIRD REPEAT DOMAIN OF REELIN
Descriptor:reelin, CALCIUM ION, CHLORIDE ION, ...
Authors:Nogi, T., Yasui, N., Takagi, J.
Deposit date:2006-02-03
Release date:2006-09-26
Last modified:2011-10-05
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography
Embo J., 25, 2006
3AFC
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MOUSE SEMAPHORIN 6A EXTRACELLULAR DOMAIN
Descriptor:Semaphorin-6A, N-ACETYL-D-GLUCOSAMINE
Authors:Yasui, N., Nogi, T., Mihara, E., Takagi, J.
Deposit date:2010-02-26
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
3WKL
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THE PERIPLASMIC PDZ TANDEM FRAGMENT OF THE RSEP HOMOLOGUE FROM AQUIFEX AEOLICUS
Descriptor:Putative Zinc Metalloprotease AQ_1964
Authors:Nogi, T., Tabata, S., Tamura-kawakami, K., Takagi, J.
Deposit date:2013-10-28
Release date:2013-12-18
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP
Structure, 22, 2013
3WKM
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THE PERIPLASMIC PDZ TANDEM FRAGMENT OF THE RSEP HOMOLOGUE FROM AQUIFEX AEOLICUS IN COMPLEX WITH THE FAB FRAGMENT
Descriptor:Putative zinc metalloprotease aq_1964, MOUSE IGG1-KAPPA FAB (HEAVY CHAIN), MOUSE IGG1-KAPPA FAB (LIGHT CHAIN)
Authors:Nogi, T., Tabata, S., Tamura-kawakami, K., Takagi, J.
Deposit date:2013-10-28
Release date:2013-12-18
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP
Structure, 22, 2013
5B4Y
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CRYSTAL STRUCTURE OF THE LA12 FRAGMENT OF APOER2
Descriptor:Low-density lipoprotein receptor-related protein 8, CALCIUM ION
Authors:Nogi, T., Tabata, S., Hirai, H., Yasui, N., Takagi, J.
Deposit date:2016-04-20
Release date:2017-04-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand.
To Be Published
1IUA
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ULTRA-HIGH RESOLUTION STRUCTURE OF HIPIP FROM THERMOCHROMATIUM TEPIDUM
Descriptor:High-potential iron-sulfur protein, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Liu, L., Nogi, T., Kobayashi, M., Nozawa, T., Miki, K.
Deposit date:2002-03-01
Release date:2002-03-20
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum.
Acta Crystallogr.,Sect.D, 58, 2002
1JWF
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CRYSTAL STRUCTURE OF HUMAN GGA1 VHS DOMAIN.
Descriptor:ADP-ribosylation factor binding protein GGA1
Authors:Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.
Deposit date:2001-09-04
Release date:2002-03-06
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
Nature, 415, 2002
1JWG
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH CATION-INDEPENDENT M6PR C-TERMINAL PEPTIDE
Descriptor:ADP-ribosylation factor binding protein GGA1, Cation-independent mannose-6-phosphate receptor, IODIDE ION
Authors:Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.
Deposit date:2001-09-04
Release date:2002-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
Nature, 415, 2002
1J2J
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CRYSTAL STRUCTURE OF GGA1 GAT N-TERMINAL REGION IN COMPLEX WITH ARF1 GTP FORM
Descriptor:ADP-ribosylation factor 1, ADP-ribosylation factor binding protein GGA1, MAGNESIUM ION, ...
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-01-05
Release date:2003-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
NAT.STRUCT.BIOL., 10, 2003
1O3X
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CRYSTAL STRUCTURE OF HUMAN GGA1 GAT DOMAIN
Descriptor:ADP-ribosylation factor binding protein GGA1
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-05-08
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of Membrane Recruitment of Gga by Arf in Lysosomal Protein Transport
Nat.Struct.Biol., 10, 2003
1O3Y
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CRYSTAL STRUCTURE OF MOUSE ARF1 (DELTA17-Q71L), GTP FORM
Descriptor:ADP-ribosylation factor 1, MAGNESIUM ION, GUANOSINE-5'-TRIPHOSPHATE
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-05-08
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
Nat.Struct.Biol., 10, 2003
2E26
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CRYSTAL STRUCTURE OF TWO REPEAT FRAGMENT OF REELIN
Descriptor:Reelin, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Yasui, N., Nogi, T., Kitao, T., Takagi, J.
Deposit date:2006-11-08
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ZOT
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CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 1)
Descriptor:Spondin-1
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
2ZOU
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CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 2)
Descriptor:Spondin-1, 1,2-ETHANEDIOL
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
3A7Q
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STRUCTURAL BASIS FOR SPECIFIC RECOGNITION OF REELIN BY ITS RECEPTORS
Descriptor:Reelin, Low-density lipoprotein receptor-related protein 8, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Yasui, N., Nogi, T., Takagi, J.
Deposit date:2009-10-01
Release date:2010-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Specific Recognition of Reelin by Its Receptors
Structure, 18, 2010
3ASI
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ALPHA-NEUREXIN-1 ECTODOMAIN FRAGMENT; LNS5-EGF3-LNS6
Descriptor:Neurexin-1-alpha, CALCIUM ION, N-ACETYL-D-GLUCOSAMINE
Authors:Tanaka, H., Nogi, T., Yasui, N., Takagi, J.
Deposit date:2010-12-13
Release date:2011-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin
Plos One, 6, 2011
3VI3
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CRYSTAL STRUCTURE OF ALPHA5BETA1 INTEGRIN HEADPIECE (LIGAND-FREE FORM)
Descriptor:Integrin alpha-5, Integrin beta-1, SG/19 Fab fragment (Light chain), ...
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2011-09-21
Release date:2012-02-22
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of alpha5beta1 integrin ectodomain: Atomic details of the fibronectin receptor
J.Cell Biol., 197, 2012
3VI4
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CRYSTAL STRUCTURE OF ALPHA5BETA1 INTEGRIN HEADPIECE IN COMPLEX WITH RGD PEPTIDE
Descriptor:Integrin alpha-5, Integrin beta-1, SG/19 Fab fragment (Light chain), ...
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2011-09-21
Release date:2012-02-22
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of alpha5beta1 integrin ectodomain: Atomic details of the fibronectin receptor
J.Cell Biol., 197, 2012
3VKF
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CRYSTAL STRUCTURE OF NEUREXIN 1BETA/NEUROLIGIN 1 COMPLEX
Descriptor:Neuroligin-1, Neurexin-1-beta, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Tanaka, H., Miyazaki, N., Nogi, T., Iwasaki, K., Takagi, J.
Deposit date:2011-11-15
Release date:2012-08-01
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin.
Cell Rep, 2, 2012
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