Author results

2ZPN
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THE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG8- ATG19(412-415) COMPLEX
Descriptor:Autophagy-related protein 8, Saccharomyces cerevisiae Atg19(412-415), SULFATE ION
Authors:Noda, N.N., Inagaki, F.
Deposit date:2008-07-17
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of target recognition by Atg8/LC3 during selective autophagy
Genes Cells, 13, 2008
3VH1
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CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG7 (1-595)
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH2
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CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG7 (1-613)
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH3
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CRYSTAL STRUCTURE OF ATG7CTD-ATG8 COMPLEX
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, Autophagy-related protein 8, ZINC ION
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH4
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CRYSTAL STRUCTURE OF ATG7CTD-ATG8-MGATP COMPLEX
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, Autophagy-related protein 8, ZINC ION, ...
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VP7
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CRYSTAL STRUCTURE OF THE BETA-ALPHA REPEATED, AUTOPHAGY-SPECIFIC (BARA) DOMAIN OF VPS30/ATG6
Descriptor:Vacuolar protein sorting-associated protein 30
Authors:Noda, N.N., Kobayashi, T., Adachi, W., Fujioka, Y., Ohsumi, Y., Inagaki, F.
Deposit date:2012-02-28
Release date:2012-03-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the novel C-terminal domain of VPS30/ATG6 and its specific role in autophagy
To be Published
3W1S
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CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG12-ATG5 CONJUGATE BOUND TO THE N-TERMINAL DOMAIN OF ATG16
Descriptor:Autophagy protein 5, Autophagy protein 16, Ubiquitin-like protein ATG12
Authors:Noda, N.N., Fujioka, Y., Hanada, T., Ohsumi, Y., Inagaki, F.
Deposit date:2012-11-20
Release date:2012-12-26
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the Atg12-Atg5 conjugate reveals a platform for stimulating Atg8-PE conjugation
Embo Rep., 14, 2013
2LI5
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NMR STRUCTURE OF ATG8-ATG7C30 COMPLEX
Descriptor:Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7
Authors:Kumeta, H., Satoo, K., Noda, N.N., Fujioka, Y., Ogura, K., Nakatogawa, H., Ohsumi, Y., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-11-16
Last modified:2012-03-28
Method:SOLUTION NMR
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VXW
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CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG8 COMPLEXED WITH ATG32 AIM
Descriptor:Autophagy-related protein 8, Peptide from Autophagy-related protein 32, SULFATE ION
Authors:Noda, N.N., Inagaki, F.
Deposit date:2012-09-21
Release date:2012-10-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy
J.Biol.Chem., 287, 2012
5JGF
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CRYSTAL STRUCTURE OF MAPE1
Descriptor:Vacuolar aminopeptidase 1, ZINC ION
Authors:Noda, N.N., Adachi, W., Inagaki, F.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JH9
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CRYSTAL STRUCTURE OF PRAPE1
Descriptor:Vacuolar aminopeptidase 1, ZINC ION, CACODYLATE ION
Authors:Noda, N.N., Adachi, W., Inagaki, F.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2016-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
3VX8
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CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA ATG7NTD-ATG3 COMPLEX
Descriptor:Ubiquitin-like modifier-activating enzyme atg7, Autophagy-related protein 3
Authors:Matoba, K., Fujioka, Y., Noda, N.N.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
2KWC
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THE NMR STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN ATG8
Descriptor:Autophagy-related protein 8
Authors:Kumeta, H., Watanabe, M., Nakatogawa, H., Yamaguchi, M., Ogura, K., Adachi, W., Fujioka, Y., Noda, N.N., Ohsumi, Y., Inagaki, F.
Deposit date:2010-04-05
Release date:2010-05-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the autophagy-related protein Atg8
J.Biomol.Nmr, 47, 2010
2LPU
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SOLUTION STRUCTURES OF KMATG10
Descriptor:KmAtg10
Authors:Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
Deposit date:2012-02-19
Release date:2012-08-01
Method:SOLUTION NMR
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
2N5J
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REGNASE-1 N-TERMINAL DOMAIN
Descriptor:Ribonuclease ZC3H12A
Authors:Yokogawa, M., Tsushima, T., Noda, N.N., Kumeta, H., Adachi, W., Enokizono, Y., Yamashita, K., Standley, D.M., Takeuchi, O., Akira, S., Inagaki, F.
Deposit date:2015-07-18
Release date:2016-03-16
Method:SOLUTION NMR
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
2N5K
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REGNASE-1 ZINC FINGER DOMAIN
Descriptor:Ribonuclease ZC3H12A, ZINC ION
Authors:Yokogawa, M., Tsushima, T., Noda, N.N., Kumeta, H., Adachi, W., Enokizono, Y., Yamashita, K., Standley, D.M., Takeuchi, O., Akira, S., Inagaki, F.
Deposit date:2015-07-18
Release date:2016-03-16
Method:SOLUTION NMR
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
2N5L
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REGNASE-1 C-TERMINAL DOMAIN
Descriptor:Ribonuclease ZC3H12A
Authors:Yokogawa, M., Tsushima, T., Noda, N.N., Kumeta, H., Adachi, W., Enokizono, Y., Yamashita, K., Standley, D.M., Takeuchi, O., Akira, S., Inagaki, F.
Deposit date:2015-07-18
Release date:2016-03-16
Method:SOLUTION NMR
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
2Z0D
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THE CRYSTAL STRUCTURE OF HUMAN ATG4B- LC3(1-120) COMPLEX
Descriptor:Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K., Noda, N.N., Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2Z0E
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THE CRYSTAL STRUCTURE OF HUMAN ATG4B- LC3(1-124) COMPLEX
Descriptor:Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K., Noda, N.N., Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2ZZP
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THE CRYSTAL STRUCTURE OF HUMAN ATG4B(C74S)- LC3(1-124) COMPLEX
Descriptor:Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K., Noda, N.N., Inagaki, F.
Deposit date:2009-02-22
Release date:2009-03-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
3A77
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THE CRYSTAL STRUCTURE OF PHOSPHORYLATED IRF-3
Descriptor:Interferon regulatory factor 3, ACETIC ACID, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Takahasi, K., Horiuchi, M., Noda, N.N., Inagaki, F.
Deposit date:2009-09-17
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ser386 phosphorylation of transcription factor IRF-3 induces dimerization and association with CBP/p300 without overall conformational change.
Genes Cells, 15, 2010
3A7O
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THE CRYSTAL STRUCTURE OF THE COILED-COIL DOMAIN OF SACCHAROMYCES CEREVISIAE ATG16
Descriptor:Autophagy protein 16
Authors:Fujioka, Y., Noda, N.N., Inagaki, F.
Deposit date:2009-10-01
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The dimeric coiled-coil structure of Atg16 and its functional significance in autophagy
To be Published
3A7P
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THE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG16
Descriptor:Autophagy protein 16
Authors:Fujioka, Y., Noda, N.N., Inagaki, F.
Deposit date:2009-10-01
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The dimeric coiled-coil structure of Atg16 and its functional significance in autophagy
To be Published
3VGO
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CRYSTAL STRUCTURE OF THE N-TERMINAL FRAGMENT OF CBL-B
Descriptor:E3 ubiquitin-protein ligase CBL-B
Authors:Kobashigawa, Y., Noda, N.N., Inagaki, F.
Deposit date:2011-08-18
Release date:2011-12-14
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Proc.Natl.Acad.Sci.USA, 108, 2011
3VGP
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CRYSTAL STRUCTURE OF THE C-TERMINAL GLOBULAR DOMAIN OF OLIGOSACCHARYLTRANSFERASE (AF_0329) FROM ARCHAEOGLOBUS FULGIDUS
Descriptor:Transmembrane oligosaccharyl transferase, putative
Authors:Matsumoto, S., Igura, M., Nyirenda, J., Yuzawa, S., Noda, N.N., Inagaki, F., Kohda, D.
Deposit date:2011-08-18
Release date:2012-07-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 A Resolution
Biochemistry, 51, 2012
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