Author results

1VFH
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CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM D-CYCLOSERINE PRODUCING STREPTOMYCES LAVENDULAE
Descriptor:alanine racemase, PYRIDOXAL-5'-PHOSPHATE
Authors:Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.
Deposit date:2004-04-13
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1VFS
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CRYSTAL STRUCTURE OF D-CYCLOSERINE-BOUND FORM OF ALANINE RACEMASE FROM D-CYCLOSERINE-PRODUCING STREPTOMYCES LAVENDULAE
Descriptor:alanine racemase, CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
Authors:Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.
Deposit date:2004-04-19
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1VFT
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CRYSTAL STRUCTURE OF L-CYCLOSERINE-BOUND FORM OF ALANINE RACEMASE FROM D-CYCLOSERINE-PRODUCING STREPTOMYCES LAVENDULAE
Descriptor:alanine racemase, CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
Authors:Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.
Deposit date:2004-04-19
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
5Y0C
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CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME AT 2.09 ANGSTROM RESOLUTION
Descriptor:DNA (146-MER), Histone H3.1, Histone H4, ...
Authors:Kurumizaka, H., Arimura, Y., Fujita, R., Noda, M.
Deposit date:2017-07-16
Release date:2018-07-18
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (2.087 Å)
Cite:Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome.
Nucleic Acids Res., 46, 2018
5Y0D
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CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING THE H2B E76K MUTANT
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Kurumizaka, H., Arimura, Y., Fujita, R., Noda, M.
Deposit date:2017-07-16
Release date:2018-07-18
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome.
Nucleic Acids Res., 46, 2018
2ZRR
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CRYSTAL STRUCTURE OF AN IMMUNITY PROTEIN THAT CONTRIBUTES TO THE SELF-PROTECTION OF BACTERIOCIN-PRODUCING ENTEROCOCCUS MUNDTII 15-1A
Descriptor:Mundticin KS immunity protein
Authors:Jeon, H.J., Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.
Deposit date:2008-08-30
Release date:2009-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure and mutagenic analysis of a bacteriocin immunity protein, Mun-im
Biochem.Biophys.Res.Commun., 378, 2009
3A4U
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CRYSTAL STRUCTURE OF MCFD2 IN COMPLEX WITH CARBOHYDRATE RECOGNITION DOMAIN OF ERGIC-53
Descriptor:Protein ERGIC-53, Multiple coagulation factor deficiency protein 2, CALCIUM ION, ...
Authors:Nishio, M., Kamiya, Y., Mizushima, T., Wakatsuki, S., Sasakawa, H., Yamamoto, K., Uchiyama, S., Noda, M., McKay, A.R., Fukui, K., Hauri, H.P., Kato, K.
Deposit date:2009-07-17
Release date:2010-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency.
Proc.Natl.Acad.Sci.USA, 107, 2010
3VVL
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CRYSTAL STRUCTURE OF L-SERINE-O-ACETYLTRANSFERASE FOUND IN D-CYCLOSERINE BIOSYNTHETIC PATHWAY
Descriptor:Homoserine O-acetyltransferase
Authors:Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.
Deposit date:2012-07-26
Release date:2013-03-20
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
3VVM
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CRYSTAL STRUCTURE OF G52A-P55G MUTANT OF L-SERINE-O-ACETYLTRANSFERASE FOUND IN D-CYCLOSERINE BIOSYNTHETIC PATHWAY
Descriptor:Homoserine O-acetyltransferase
Authors:Oda, K., Matoba, Y., Kumagai, T., Noda, M., Sugiyama, M.
Deposit date:2012-07-26
Release date:2013-03-20
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
5AXE
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CRYSTAL STRUCTURE ANALYSIS OF DNA DUPLEXES CONTAINING SULFOAMIDE-BRIDGED NUCLEIC ACID (SUNA-NH)
Descriptor:DNA (5'-D(*GP*CP*GP*TP*AP*(LSH)P*AP*CP*GP*C)-3')
Authors:Mitsuoka, Y., Aoyama, H., Kugimiya, A., Fujimura, Y., Yamamoto, T., Waki, R., Wada, F., Tahara, S., Sawamura, M., Noda, M., Hari, Y., Obika, S.
Deposit date:2015-07-28
Release date:2016-07-20
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Effect of an N-substituent in sulfonamide-bridged nucleic acid (SuNA) on hybridization ability and duplex structure.
Org.Biomol.Chem., 14, 2016
5AXF
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CRYSTAL STRUCTURE ANALYSIS OF DNA DUPLEXES CONTAINING SULFOAMIDE-BRIDGED NUCLEIC ACID (SUNA-NME)
Descriptor:DNA (5'-D(*GP*CP*GP*TP*AP*(LSM)P*AP*CP*GP*C)-3')
Authors:Mitsuoka, Y., Aoyama, H., Kugimiya, A., Fujimura, Y., Yamamoto, T., Waki, R., Wada, F., Tahara, S., Sawamura, M., Noda, M., Hari, Y., Obika, S.
Deposit date:2015-07-28
Release date:2016-07-20
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Effect of an N-substituent in sulfonamide-bridged nucleic acid (SuNA) on hybridization ability and duplex structure.
Org.Biomol.Chem., 14, 2016
1AO6
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CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN
Descriptor:SERUM ALBUMIN
Authors:Sugio, S., Mochizuki, S., Noda, M., Kashima, A.
Deposit date:1997-07-18
Release date:1998-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human serum albumin at 2.5 A resolution.
Protein Eng., 12, 1999
1BM0
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CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN
Descriptor:SERUM ALBUMIN
Authors:Sugio, S., Kashima, A., Mochizuki, S., Noda, M., Kobayashi, K.
Deposit date:1998-07-28
Release date:1999-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human serum albumin at 2.5 A resolution.
Protein Eng., 12, 1999
3VR0
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CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS PBAB, AN ARCHAEAL PROTEASOME ACTIVATOR
Descriptor:Putative uncharacterized protein, GOLD ION
Authors:Kumoi, K., Satoh, T., Hiromoto, T., Mizushima, T., Kamiya, Y., Noda, M., Uchiyama, S., Murata, K., Yagi, H., Kato, K.
Deposit date:2012-04-02
Release date:2013-04-03
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An archaeal homolog of proteasome assembly factor functions as a proteasome activator
Plos One, 8, 2013
3WJ4
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIBUTYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, tributylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIPHENYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
4U4P
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CRYSTAL STRUCTURE OF THE HUMAN CONDENSIN SMC HINGE DOMAIN HETERODIMER WITH SHORT COILED COILS
Descriptor:Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
Authors:Uchiyama, S., Kawahara, K., Hosokawa, Y., Fukakusa, S., Oki, H., Nakamura, S., Noda, M., Takino, R., Miyahara, Y., Maruno, T., Kobayashi, Y., Ohkubo, T., Fukui, K.
Deposit date:2014-07-24
Release date:2015-08-26
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
5JQP
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CRYSTAL STRUCTURE OF ER GLUCOSIDASE II HETERODIMERIC COMPLEX CONSISTING OF CATALYTIC SUBUNIT AND THE BINDING DOMAIN OF REGULATORY SUBUNIT
Descriptor:Alpha glucosidase-like protein, Glucosidase 2 subunit beta-like protein, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Satoh, T., Toshimori, T., Noda, M., Uchiyama, S., Kato, K.
Deposit date:2016-05-05
Release date:2016-09-14
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Interaction mode between catalytic and regulatory subunits in glucosidase II involved in ER glycoprotein quality control.
Protein Sci., 25, 2016
5H08
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HUMAN PTPRZ D1 DOMAIN COMPLEXED WITH NAZ2329
Descriptor:Receptor-type tyrosine-protein phosphatase zeta, 3-{[2-Ethoxy-5-(trifluoromethyl)benzyl]sulfanyl}-N-(phenylsulfonyl)thiophene-2-carboxamide
Authors:Sugawara, H.
Deposit date:2016-10-04
Release date:2017-07-26
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Targeting PTPRZ inhibits stem cell-like properties and tumorigenicity in glioblastoma cells
Sci Rep, 7, 2017
5AWX
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CRYSTAL STRUCTURE OF HUMAN PTPRZ D1 DOMAIN
Descriptor:Receptor-type tyrosine-protein phosphatase zeta, BROMIDE ION
Authors:Sugawara, H.
Deposit date:2015-07-10
Release date:2016-02-17
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Small-molecule inhibition of PTPRZ reduces tumor growth in a rat model of glioblastoma
Sci Rep, 6, 2016
3AZO
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CRYSTAL STRUCTURE OF PUROMYCIN HYDROLASE
Descriptor:Aminopeptidase, SULFATE ION
Authors:Matoba, Y., Sugiyama, M.
Deposit date:2011-05-27
Release date:2011-07-27
Last modified:2011-09-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
3AZP
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CRYSTAL STRUCTURE OF PUROMYCIN HYDROLASE S511A MUTANT
Descriptor:Aminopeptidase, SULFATE ION
Authors:Matoba, Y., Sugiyama, M.
Deposit date:2011-05-27
Release date:2011-07-27
Last modified:2011-09-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
3AZQ
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CRYSTAL STRUCTURE OF PUROMYCIN HYDROLASE S511A MUTANT COMPLEXED WITH PGG
Descriptor:Aminopeptidase, tripeptide PGG, SULFATE ION
Authors:Matoba, Y., Sugiyama, M.
Deposit date:2011-05-27
Release date:2011-07-27
Last modified:2011-09-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
3WSV
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CRYSTAL STRUCTURE OF MINOR L-LACTATE DEHYDROGENASE FROM ENTEROCOCCUS MUNDTII IN THE LIGANDS-UNBOUND FORM
Descriptor:L-lactate dehydrogenase, GLYCEROL
Authors:Matoba, Y., Sugiyama, M.
Deposit date:2014-03-27
Release date:2014-09-10
Last modified:2014-10-01
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A
FEBS OPEN BIO, 2014
3WSW
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CRYSTAL STRUCTURE OF MINOR L-LACTATE DEHYDROGENASE FROM ENTEROCOCCUS MUNDTII IN THE LIGANDS-BOUND FORM
Descriptor:L-lactate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, GLYCEROL, ...
Authors:Matoba, Y., Sugiyama, M.
Deposit date:2014-03-27
Release date:2014-09-10
Last modified:2014-10-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A
FEBS OPEN BIO, 2014
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