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1ITQ
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BU of 1itq by Molmil
HUMAN RENAL DIPEPTIDASE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, RENAL DIPEPTIDASE, ZINC ION
Authors:Nitanai, Y, Satow, Y, Adachi, H, Tsujimoto, M.
Deposit date:2002-02-02
Release date:2002-08-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Human Renal Dipeptidase Involved in beta-Lactam Hydrolysis
J.Mol.Biol., 321, 2002
1ITU
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BU of 1itu by Molmil
HUMAN RENAL DIPEPTIDASE COMPLEXED WITH CILASTATIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CILASTATIN, RENAL DIPEPTIDASE, ...
Authors:Nitanai, Y, Satow, Y, Adachi, H, Tsujimoto, M.
Deposit date:2002-02-03
Release date:2002-08-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human Renal Dipeptidase Involved in beta-Lactam Hydrolysis
J.Mol.Biol., 321, 2002
1FVM
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BU of 1fvm by Molmil
Complex of vancomycin with DI-acetyl-LYS-D-ALA-D-ALA
Descriptor: DI-ACETYL-LYS-D-ALA-D-ALA, VANCOMYCIN, vancosamine-(1-2)-beta-D-glucopyranose
Authors:Nitanai, Y, Kakoi, K, Aoki, K.
Deposit date:2000-09-20
Release date:2000-11-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of the Complexes between Vancomycin and Cell-Wall Precursor Analogs.
J.Mol.Biol., 385, 2009
2D3E
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BU of 2d3e by Molmil
Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin
Descriptor: General control protein GCN4 and Tropomyosin 1 alpha chain
Authors:Nitanai, Y, Maeda, K, Oda, N, Minakata, S, Maeda, Y.
Deposit date:2005-09-27
Release date:2006-09-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Crystal Structure of C-Terminal Fragment of Rabbit Skeletal Alpha-Tropomyosin; Crystallographic Evidence of Tropomyosin Bending
To be Published
2ZQD
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BU of 2zqd by Molmil
Ceftazidime acyl-intermediate structure of class a beta-lact Toho-1 E166A/R274N/R276N triple mutant
Descriptor: ACYLATED CEFTAZIDIME, Beta-lactamase Toho-1, SULFATE ION
Authors:Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQA
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BU of 2zqa by Molmil
Cefotaxime acyl-intermediate structure of class a beta-lacta Toho-1 E166A/R274N/R276N triple mutant
Descriptor: Beta-lactamase Toho-1, CEFOTAXIME, C3' cleaved, ...
Authors:Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQ9
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BU of 2zq9 by Molmil
Cephalothin acyl-intermediate structure of class a beta-lactamase Toho-1 E166A/R274N/R276N triple mutant
Descriptor: 5-METHYLENE-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-5,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, Beta-lactamase Toho-1, CEPHALOTHIN, ...
Authors:Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQC
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BU of 2zqc by Molmil
Aztreonam acyl-intermediate structure of class a beta-lactam Toho-1 E166A/R274N/R276N triple mutant
Descriptor: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, Beta-lactamase Toho-1, SULFATE ION
Authors:Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
3VPK
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BU of 3vpk by Molmil
Crystal Structure of 6-Guanidinohexanoyl Trypsin
Descriptor: 6-carbamimidamidohexanoic acid, CALCIUM ION, Cationic trypsin, ...
Authors:Masuda, Y, Nitanai, Y, Mizutani, R, Noguchi, S.
Deposit date:2012-03-05
Release date:2012-05-23
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of 6-guanidinohexanoyl trypsin near the optimum pH reveals the acyl-enzyme intermediate to be deacylated
Proteins, 2012
3AA0
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BU of 3aa0 by Molmil
Crystal structure of Actin Capping Protein in complex with the Cp-binding motif derived from CARMIL
Descriptor: 21mer peptide from Leucine-rich repeat-containing protein 16A, CARBONATE ION, F-actin-capping protein subunit alpha-1, ...
Authors:Takeda, S, Minakata, S, Narita, A, Kitazawa, M, Yamakuni, T, Maeda, Y, Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AA1
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BU of 3aa1 by Molmil
Crystal structure of Actin capping protein in complex with the Cp-binding motif derived from CKIP-1
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 23mer peptide from Pleckstrin homology domain-containing family O member 1, F-actin-capping protein subunit alpha-1, ...
Authors:Takeda, S, Minakata, S, Narita, A, Kitazawa, M, Yamakuni, T, Maeda, Y, Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AA6
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BU of 3aa6 by Molmil
Crystal structure of Actin capping protein in complex with the Cp-binding motif derived from CD2AP
Descriptor: 23mer peptide from CD2-associated protein, BARIUM ION, F-actin-capping protein subunit alpha-1, ...
Authors:Takeda, S, Minakata, S, Narita, A, Kitazawa, M, Yamakuni, T, Maeda, Y, Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
2EFS
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BU of 2efs by Molmil
Crystal structure of the C-terminal tropomyosin fragment with N- and C-terminal extensions of the leucine zipper at 2.0 angstroms resolution
Descriptor: General control protein GCN4 and Tropomyosin 1 alpha chain
Authors:Minakata, S, Nitanai, Y, Maeda, K, Oda, N, Wakabayashi, K, Maeda, Y.
Deposit date:2007-02-23
Release date:2008-03-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule
To be Published
2EFR
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BU of 2efr by Molmil
Crystal structure of the c-terminal tropomyosin fragment with N- and C-terminal extensions of the leucine zipper at 1.8 angstroms resolution
Descriptor: General control protein GCN4 and Tropomyosin 1 alpha chain
Authors:Minakata, S, Nitanai, Y, Maeda, K, Oda, N, Wakabayashi, K, Maeda, Y.
Deposit date:2007-02-23
Release date:2008-03-04
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule
To be Published
2ZGY
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BU of 2zgy by Molmil
PARM with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
Authors:Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZGZ
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BU of 2zgz by Molmil
PARM with GMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Plasmid segregation protein parM
Authors:Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
3AAA
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BU of 3aaa by Molmil
Crystal Structure of Actin capping protein in complex with V-1
Descriptor: F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2, ISOPROPYL ALCOHOL, ...
Authors:Takeda, S, Minakata, S, Narita, A, Kitazawa, M, Yamakuni, T, Maeda, Y, Nitanai, Y.
Deposit date:2009-11-12
Release date:2010-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AA7
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BU of 3aa7 by Molmil
Crystal structure of Actin capping protein
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BARIUM ION, F-actin-capping protein subunit alpha-1, ...
Authors:Takeda, S, Minakata, S, Narita, A, Kitazawa, M, Yamakuni, T, Maeda, Y, Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AAE
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BU of 3aae by Molmil
Crystal structure of Actin capping protein in complex with CARMIL fragment
Descriptor: 32mer peptide from Leucine-rich repeat-containing protein 16A, F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2
Authors:Takeda, S, Minakata, S, Narita, A, Kitazawa, M, Yamakuni, T, Maeda, Y, Nitanai, Y.
Deposit date:2009-11-16
Release date:2010-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions
To be Published
2ZHC
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BU of 2zhc by Molmil
ParM filament
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
Authors:Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
Deposit date:2008-02-04
Release date:2008-02-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (23 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZQ8
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BU of 2zq8 by Molmil
Apo structure of class a beta-lactamase Toho-1 R274N/R276N double mutant
Descriptor: Beta-lactamase Toho-1, SULFATE ION
Authors:Shimamura, T, Nitanai, Y, Uchiyama, T, Ago, H, Matsuzawa, H, Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Improvement of crystal quality by surface mutations of beta-lactamase Toho-1
Acta Crystallogr.,Sect.F, 65, 2009
2ZQ7
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BU of 2zq7 by Molmil
Apo structure of Class A beta-lactamase Toho-1 E166A/R274N/R276N triple mutant
Descriptor: Beta-lactamase Toho-1, SULFATE ION
Authors:Shimamura, T, Nitanai, Y, Uchiyama, T, Ago, H, Matsuzawa, H, Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Improvement of the Crystal Quality by the Surface Mutations on a Beta-Lactamase Toho-1
To be Published
1IO0
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BU of 1io0 by Molmil
CRYSTAL STRUCTURE OF TROPOMODULIN C-TERMINAL HALF
Descriptor: TROPOMODULIN, ZINC ION
Authors:Krieger, I, Kostyukova, A, Yamashita, A, Maeda, Y.
Deposit date:2000-12-14
Release date:2002-11-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of the C-terminal half of tropomodulin and structural basis of actin filament pointed-end capping.
Biophys.J., 83, 2002
1PGV
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BU of 1pgv by Molmil
Structural Genomics of Caenorhabditis elegans: tropomodulin C-terminal domain
Descriptor: tropomodulin TMD-1
Authors:Symersky, J, Lu, S, Li, S, Chen, L, Meehan, E, Luo, M, Qiu, S, Bunzel, R.J, Luo, D, Arabashi, A, Nagy, L.A, Lin, G, Luan, W.C.-H, Carson, M, Gray, R, Huang, W, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2003-05-28
Release date:2003-06-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain
Proteins, 56, 2004

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