Author results

1ITQ
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HUMAN RENAL DIPEPTIDASE
Descriptor:RENAL DIPEPTIDASE, N-ACETYL-D-GLUCOSAMINE, ZINC ION
Authors:Nitanai, Y., Satow, Y., Adachi, H., Tsujimoto, M.
Deposit date:2002-02-02
Release date:2002-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Human Renal Dipeptidase Involved in beta-Lactam Hydrolysis
J.Mol.Biol., 321, 2002
1ITU
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HUMAN RENAL DIPEPTIDASE COMPLEXED WITH CILASTATIN
Descriptor:RENAL DIPEPTIDASE, N-ACETYL-D-GLUCOSAMINE, ZINC ION, ...
Authors:Nitanai, Y., Satow, Y., Adachi, H., Tsujimoto, M.
Deposit date:2002-02-03
Release date:2002-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human Renal Dipeptidase Involved in beta-Lactam Hydrolysis
J.Mol.Biol., 321, 2002
2D3E
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CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF RABBIT SKELETAL ALPHA-TROPOMYOSIN
Descriptor:General control protein GCN4 and Tropomyosin 1 alpha chain
Authors:Nitanai, Y., Maeda, K., Oda, N., Minakata, S., Maeda, Y.
Deposit date:2005-09-27
Release date:2006-09-12
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Crystal Structure of C-Terminal Fragment of Rabbit Skeletal Alpha-Tropomyosin; Crystallographic Evidence of Tropomyosin Bending
To be Published
2ZQ9
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CEPHALOTHIN ACYL-INTERMEDIATE STRUCTURE OF CLASS A BETA-LACTAMASE TOHO-1 E166A/R274N/R276N TRIPLE MUTANT
Descriptor:Beta-lactamase Toho-1, SULFATE ION, 5-METHYLENE-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-5,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, ...
Authors:Nitanai, Y., Shimamura, T., Uchiyama, T., Ishii, Y., Takehira, M., Yutani, K., Matsuzawa, H., Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQA
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CEFOTAXIME ACYL-INTERMEDIATE STRUCTURE OF CLASS A BETA-LACTA TOHO-1 E166A/R274N/R276N TRIPLE MUTANT
Descriptor:Beta-lactamase Toho-1, CEFOTAXIME, C3' cleaved, ...
Authors:Nitanai, Y., Shimamura, T., Uchiyama, T., Ishii, Y., Takehira, M., Yutani, K., Matsuzawa, H., Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQC
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AZTREONAM ACYL-INTERMEDIATE STRUCTURE OF CLASS A BETA-LACTAM TOHO-1 E166A/R274N/R276N TRIPLE MUTANT
Descriptor:Beta-lactamase Toho-1, SULFATE ION, 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid
Authors:Nitanai, Y., Shimamura, T., Uchiyama, T., Ishii, Y., Takehira, M., Yutani, K., Matsuzawa, H., Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2011-08-31
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQD
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CEFTAZIDIME ACYL-INTERMEDIATE STRUCTURE OF CLASS A BETA-LACT TOHO-1 E166A/R274N/R276N TRIPLE MUTANT
Descriptor:Beta-lactamase Toho-1, SULFATE ION, ACYLATED CEFTAZIDIME
Authors:Nitanai, Y., Shimamura, T., Uchiyama, T., Ishii, Y., Takehira, M., Yutani, K., Matsuzawa, H., Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
1FVM
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COMPLEX OF VANCOMYCIN WITH DI-ACETYL-LYS-D-ALA-D-ALA
Descriptor:VANCOMYCIN, DI-ACETYL-LYS-D-ALA-D-ALA, BETA-D-GLUCOSE, ...
Authors:Nitanai, Y., Kakoi, K., Aoki, K.
Deposit date:2000-09-20
Release date:2000-11-01
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of the Complexes between Vancomycin and Cell-Wall Precursor Analogs.
J.Mol.Biol., 385, 2009
2EFR
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CRYSTAL STRUCTURE OF THE C-TERMINAL TROPOMYOSIN FRAGMENT WITH N- AND C-TERMINAL EXTENSIONS OF THE LEUCINE ZIPPER AT 1.8 ANGSTROMS RESOLUTION
Descriptor:General control protein GCN4 and Tropomyosin 1 alpha chain
Authors:Minakata, S., Nitanai, Y., Maeda, K., Oda, N., Wakabayashi, K., Maeda, Y.
Deposit date:2007-02-23
Release date:2008-03-04
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule
To be Published
2EFS
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CRYSTAL STRUCTURE OF THE C-TERMINAL TROPOMYOSIN FRAGMENT WITH N- AND C-TERMINAL EXTENSIONS OF THE LEUCINE ZIPPER AT 2.0 ANGSTROMS RESOLUTION
Descriptor:General control protein GCN4 and Tropomyosin 1 alpha chain
Authors:Minakata, S., Nitanai, Y., Maeda, K., Oda, N., Wakabayashi, K., Maeda, Y.
Deposit date:2007-02-23
Release date:2008-03-04
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule
To be Published
2ZGY
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PARM WITH GDP
Descriptor:Plasmid segregation protein parM, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Popp, D., Narita, A., Oda, T., Fujisawa, T., Matsuo, H., Nitanai, Y., Iwasa, M., Maeda, K., Onishi, H., Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZGZ
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PARM WITH GMPPNP
Descriptor:Plasmid segregation protein parM, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Popp, D., Narita, A., Oda, T., Fujisawa, T., Matsuo, H., Nitanai, Y., Iwasa, M., Maeda, K., Onishi, H., Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
3AA0
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CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN IN COMPLEX WITH THE CP-BINDING MOTIF DERIVED FROM CARMIL
Descriptor:F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2, 21mer peptide from Leucine-rich repeat-containing protein 16A, ...
Authors:Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AA1
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CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN IN COMPLEX WITH THE CP-BINDING MOTIF DERIVED FROM CKIP-1
Descriptor:F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2, 23mer peptide from Pleckstrin homology domain-containing family O member 1, ...
Authors:Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AA6
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CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN IN COMPLEX WITH THE CP-BINDING MOTIF DERIVED FROM CD2AP
Descriptor:F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2, 23mer peptide from CD2-associated protein, ...
Authors:Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AA7
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CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN
Descriptor:F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2, BARIUM ION, ...
Authors:Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
Deposit date:2009-11-11
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AAA
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CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN IN COMPLEX WITH V-1
Descriptor:F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2, Myotrophin, ...
Authors:Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
Deposit date:2009-11-12
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
Plos Biol., 8, 2010
3AAE
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CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN IN COMPLEX WITH CARMIL FRAGMENT
Descriptor:F-actin-capping protein subunit alpha-1, F-actin-capping protein subunit beta isoforms 1 and 2, 32mer peptide from Leucine-rich repeat-containing protein 16A
Authors:Takeda, S., Minakata, S., Narita, A., Kitazawa, M., Yamakuni, T., Maeda, Y., Nitanai, Y.
Deposit date:2009-11-16
Release date:2010-11-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions
To be Published
3VPK
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CRYSTAL STRUCTURE OF 6-GUANIDINOHEXANOYL TRYPSIN
Descriptor:Cationic trypsin, 6-carbamimidamidohexanoic acid, CALCIUM ION, ...
Authors:Masuda, Y., Nitanai, Y., Mizutani, R., Noguchi, S.
Deposit date:2012-03-05
Release date:2012-05-23
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of 6-guanidinohexanoyl trypsin near the optimum pH reveals the acyl-enzyme intermediate to be deacylated
Proteins, 2012
2ZHC
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PARM FILAMENT
Descriptor:Plasmid segregation protein parM, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Popp, D., Narita, A., Oda, T., Fujisawa, T., Matsuo, H., Nitanai, Y., Iwasa, M., Maeda, K., Onishi, H., Maeda, Y.
Deposit date:2008-02-04
Release date:2008-02-26
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (23.799999 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZQ7
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APO STRUCTURE OF CLASS A BETA-LACTAMASE TOHO-1 E166A/R274N/R276N TRIPLE MUTANT
Descriptor:Beta-lactamase Toho-1, SULFATE ION
Authors:Shimamura, T., Nitanai, Y., Uchiyama, T., Ago, H., Matsuzawa, H., Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Improvement of the Crystal Quality by the Surface Mutations on a Beta-Lactamase Toho-1
To be Published
2ZQ8
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APO STRUCTURE OF CLASS A BETA-LACTAMASE TOHO-1 R274N/R276N DOUBLE MUTANT
Descriptor:Beta-lactamase Toho-1, SULFATE ION
Authors:Shimamura, T., Nitanai, Y., Uchiyama, T., Ago, H., Matsuzawa, H., Miyano, M.
Deposit date:2008-08-07
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Improvement of crystal quality by surface mutations of beta-lactamase Toho-1
Acta Crystallogr.,Sect.F, 65, 2009
1IO0
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CRYSTAL STRUCTURE OF TROPOMODULIN C-TERMINAL HALF
Descriptor:TROPOMODULIN, ZINC ION
Authors:Krieger, I., Kostyukova, A., Yamashita, A., Maeda, Y.
Deposit date:2000-12-14
Release date:2002-11-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of the C-terminal half of tropomodulin and structural basis of actin filament pointed-end capping
BIOPHYS.J., 83, 2002
1PGV
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STRUCTURAL GENOMICS OF CAENORHABDITIS ELEGANS: TROPOMODULIN C-TERMINAL DOMAIN
Descriptor:tropomodulin TMD-1
Authors:Symersky, J., Lu, S., Li, S., Chen, L., Meehan, E., Luo, M., Qiu, S., Bunzel, R.J., Luo, D., Arabashi, A., Nagy, L.A., Lin, G., Luan, W.C.-H., Carson, M., Gray, R., Huang, W., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2003-05-28
Release date:2003-06-10
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain
Proteins, 56, 2004