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1DHH
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GG)R(AGAU)D(GAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*G)-R(P*AP*GP*AP*U)-D(P*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-10-18
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1DRN
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NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GGAGA)R(UGAC)/D(GTCATCTCC)
Descriptor:DNA/RNA (5'-D(*GP*GP*AP*GP*A)-R(P*UP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
Authors:Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyogoku, Y., Ohtsuka, E.
Deposit date:1995-11-15
Release date:1996-04-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
Biochemistry, 35, 1996
1NAO
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SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE CENTER, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:RNA (5'-R(*GP*GP*AP*GP*AP*UP*GP*AP*C)-3'), DNA/RNA (5'-R(*OMGP*OMUP*OMC)-D(P*AP*TP*CP*T)-R(P*OMCP*OMC)-3')
Authors:Nishizaki, T., Iwai, S., Ohtsuka, E., Nakamura, H.
Deposit date:1996-03-29
Release date:1997-01-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA.2'-O-methylated RNA hybrid duplex containing an RNA.DNA hybrid segment at the center.
Biochemistry, 36, 1997
1D7Y
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CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsui, Y.
Deposit date:1999-10-21
Release date:2000-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1F3P
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FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsuidagger, Y.
Deposit date:2000-06-06
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1KW3
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYAL DIOXYGENASE (BPHC) AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW6
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW8
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CRYSTAL STRUCTURE OF BPHC-2,3-DIHYDROXYBIPHENYL-NO COMPLEX
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, NITRIC OXIDE, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW9
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 2.0A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWB
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CRYSTAL STRUCTURE OF THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENY DIOXYGENASE (BPHC)
Descriptor:2,3-Dihydroxybiphenyl dioxygenase
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWC
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THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL
Descriptor:2,3-dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
3VHL
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CRYSTAL STRUCTURE OF THE DHR-2 DOMAIN OF DOCK8 IN COMPLEX WITH CDC42 (T17N MUTANT)
Descriptor:Dedicator of cytokinesis protein 8, Cell division control protein 42 homolog, PHOSPHATE ION
Authors:Hanawa-Suetsugu, K., Kukimoto-Niino, M., Nishizak, T., Terada, T., Shirouzu, M., Fukui, Y., Yokoyama, S.
Deposit date:2011-08-26
Release date:2012-06-20
Method:X-RAY DIFFRACTION (2.085 Å)
Cite:DOCK8 is a Cdc42 activator critical for interstitial dendritic cell migration during immune responses.
Blood, 119, 2012
1ULI
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BIPHENYL DIOXYGENASE (BPHA1A2) DERIVED FROM RHODOCOCCUS SP. STRAIN RHA1
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
1ULJ
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BIPHENYL DIOXYGENASE (BPHA1A2) IN COMPLEX WITH THE SUBSTRATE
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004