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3VLU
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CRYSTAL STRUCTURE OF SPHINGOMONAS SP. A1 ALGINATE-BINDING PROTEIN ALGQ1 IN COMPLEX WITH SATURATED TRIMANNURONATE
Descriptor:AlgQ1, CALCIUM ION, beta-D-mannuronic acid
Authors:Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2013-11-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VLV
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CRYSTAL STRUCTURE OF SPHINGOMONAS SP. A1 ALGINATE-BINDING PTOTEIN ALGQ1 IN COMPLEX WITH UNSATURATED TRIGULURONATE
Descriptor:AlgQ1, CALCIUM ION, 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid, ...
Authors:Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2013-11-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VLW
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CRYSTAL STRUCTURE OF SPHINGOMONAS SP. A1 ALGINATE-BINDING PROTEIN ALGQ1 IN COMPLEX WITH MANNURONATE-GULURONATE DISACCHARIDE
Descriptor:AlgQ1, CALCIUM ION, beta-D-mannuronic acid, ...
Authors:Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2013-11-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
2DKA
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CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINE-PHOSPHATE MUTASE, A MEMBER OF THE ALPHA-D-PHOSPHOHEXOMUTASE SUPERFAMILY, IN THE APO-FORM
Descriptor:Phosphoacetylglucosamine mutase
Authors:Nishitani, Y., Maruyama, D., Nonaka, T., Kita, A., Fukami, T.A., Mio, T., Yamada-Okabe, H., Yamada-Okabe, T., Miki, K.
Deposit date:2006-04-07
Release date:2006-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal Structures of N-Acetylglucosamine-phosphate Mutase, a Member of the {alpha}-D-Phosphohexomutase Superfamily, and Its Substrate and Product Complexes.
J.Biol.Chem., 281, 2006
2DKC
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CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINE-PHOSPHATE MUTASE, A MEMBER OF THE ALPHA-D-PHOSPHOHEXOMUTASE SUPERFAMILY, IN THE SUBSTRATE COMPLEX
Descriptor:Phosphoacetylglucosamine mutase, N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE, PHOSPHATE ION, ...
Authors:Nishitani, Y., Maruyama, D., Nonaka, T., Kita, A., Fukami, T.A., Mio, T., Yamada-Okabe, H., Yamada-Okabe, T., Miki, K.
Deposit date:2006-04-07
Release date:2006-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures of N-Acetylglucosamine-phosphate Mutase, a Member of the {alpha}-D-Phosphohexomutase Superfamily, and Its Substrate and Product Complexes.
J.Biol.Chem., 281, 2006
2DKD
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CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINE-PHOSPHATE MUTASE, A MEMBER OF THE ALPHA-D-PHOSPHOHEXOMUTASE SUPERFAMILY, IN THE PRODUCT COMPLEX
Descriptor:Phosphoacetylglucosamine mutase, N-ACETYL-ALPHA-D-GALACTOSAMINE 1-PHOSPHATE, PHOSPHATE ION, ...
Authors:Nishitani, Y., Maruyama, D., Nonaka, T., Kita, A., Fukami, T.A., Mio, T., Yamada-Okabe, H., Yamada-Okabe, T., Miki, K.
Deposit date:2006-04-07
Release date:2006-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of N-Acetylglucosamine-phosphate Mutase, a Member of the {alpha}-D-Phosphohexomutase Superfamily, and Its Substrate and Product Complexes.
J.Biol.Chem., 281, 2006
3A12
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CRYSTAL STRUCTURE OF TYPE III RUBISCO COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A13
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP AND ACTIVATED WITH CA
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, ...
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Sturcture-based optimization of a Type III Rubisco from a hyperthermophile
To be Published
3KDN
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDO
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP6 MUTANT COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
4GA4
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE N-TERMINAL DELETION MUTANT
Descriptor:Putative thymidine phosphorylase, PHOSPHATE ION
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4GA5
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE C-TERMINAL DELETION MUTANT IN THE APO-FORM
Descriptor:Putative thymidine phosphorylase
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4GA6
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CRYSTAL STRUCTURE OF AMP PHOSPHORYLASE C-TERMINAL DELETION MUTANT IN COMPLEX WITH SUBSTRATES
Descriptor:Putative thymidine phosphorylase, ADENOSINE MONOPHOSPHATE, SULFATE ION
Authors:Nishitani, Y., Aono, R., Nakamura, A., Sato, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
5HEE
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CRYSTAL STRUCTURE OF THE TK2203 PROTEIN
Descriptor:Putative uncharacterized protein, TK2203 protein, ZINC ION, ...
Authors:Nishitani, Y., Miki, K.
Deposit date:2016-01-06
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase
Acta Crystallogr.,Sect.F, 72, 2016
5XSV
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CRYSTAL STRUCTURE OF AN ARCHAEAL CHITINASE IN THE LIGAND-FREE FORM
Descriptor:Chitinase, COBALT (II) ION, SULFATE ION
Authors:Nishitani, Y., Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (3.723 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5XSW
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CRYSTAL STRUCTURE OF AN ARCHAEAL CHITINASE IN THE SUBSTRATE-COMPLEX FORM (P63)
Descriptor:Chitinase, PHOSPHATE ION, GLYCEROL, ...
Authors:Nishitani, Y., Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5XSX
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CRYSTAL STRUCTURE OF AN ARCHAEAL CHITINASE IN THE SUBSTRATE-COMPLEX FORM (P212121)
Descriptor:Chitinase, TRIACETYLCHITOTRIOSE, DI(N-ACETYL-D-GLUCOSAMINE), ...
Authors:Nishitani, Y., Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.642 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
4TQU
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CRYSTAL STRUCTURE OF A BACTERIAL ABC TRANSPORTER INVOLVED IN THE IMPORT OF THE ACIDIC POLYSACCHARIDE ALGINATE
Descriptor:AlgM1, AlgM2, AlgS, ...
Authors:Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2014-06-12
Release date:2015-07-22
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (3.204 Å)
Cite:Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate
Structure, 23, 2015
4TQV
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CRYSTAL STRUCTURE OF A BACTERIAL ABC TRANSPORTER INVOLVED IN THE IMPORT OF THE ACIDIC POLYSACCHARIDE ALGINATE
Descriptor:AlgM1, AlgM2, AlgS
Authors:Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2014-06-12
Release date:2015-07-22
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (4.504 Å)
Cite:Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate
Structure, 23, 2015
5AYV
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CRYSTAL STRUCTURE OF ARCHAEAL KETOPANTOATE REDUCTASE COMPLEXED WITH COENZYME A AND 2-OXOPANTOATE
Descriptor:2-dehydropantoate 2-reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ACETATE ION, ...
Authors:Aikawa, Y., Nishitani, Y., Miki, K.
Deposit date:2015-09-08
Release date:2016-01-27
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (1.647 Å)
Cite:Crystal structure of archaeal ketopantoate reductase complexed with coenzyme a and 2-oxopantoate provides structural insights into feedback regulation
Proteins, 84, 2016
5HWS
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CRYSTAL STRUCTURE OF KETOPANTOATE REDUCTASE FROM THERMOCOCCUS KODAKARENSIS COMPLEXED WITH NADP+
Descriptor:2-dehydropantoate 2-reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Aikawa, Y., Nishitani, Y., Miki, K.
Deposit date:2016-01-29
Release date:2016-05-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of ketopantoate reductase from Thermococcus kodakarensis complexed with NADP+
Acta Crystallogr.,Sect.F, 72, 2016
5IJA
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[NIFE] HYDROGENASE MATURATION PROTEASE HYBD FROM THERMOCOCCUS KODAKARENSIS
Descriptor:Hydrogenase-specific maturation endopeptidase
Authors:Kwon, S., Nishitani, Y., Watanabe, S., Miki, K.
Deposit date:2016-03-01
Release date:2016-06-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1
Proteins, 84, 2016
5ZBY
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CRYSTAL STRUCTURE OF A [NIFE] HYDROGENASE MATURATION PROTEASE HYCI FROM THERMOCOCCUS KODAKARENSIS KOD1
Descriptor:Hydrogenase maturation protease HycI, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Kwon, S., Nishitani, Y., Miki, K.
Deposit date:2018-02-13
Release date:2018-03-28
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.591 Å)
Cite:Structure of a [NiFe] hydrogenase maturation protease HycI provides insights into its substrate selectivity
Biochem. Biophys. Res. Commun., 498, 2018
2YQC
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CRYSTAL STRUCTURE OF URIDINE-DIPHOSPHO-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE FROM CANDIDA ALBICANS, IN THE APO-LIKE FORM
Descriptor:UDP-N-acetylglucosamine pyrophosphorylase, MAGNESIUM ION, GLYCEROL
Authors:Miki, K., Maruyama, D., Nishitani, Y., Nonaka, T., Kita, A.
Deposit date:2007-03-30
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQH
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CRYSTAL STRUCTURE OF URIDINE-DIPHOSPHO-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE FROM CANDIDA ALBICANS, IN THE SUBSTRATE-BINDING FORM
Descriptor:UDP-N-acetylglucosamine pyrophosphorylase, 2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE, SULFATE ION, ...
Authors:Miki, K., Maruyama, D., Nishitani, Y., Nonaka, T., Kita, A.
Deposit date:2007-03-30
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
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