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3D79
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH0734.1 FROM HYPERTHERMOPHILIC ARCHAEA PYROCOCCUS HORIKOSHII OT3
Descriptor:Putative uncharacterized protein PH0734
Authors:Nishimura, Y., Miyazono, K., Sawano, Y., Makino, T., Nagata, K., Tanokura, M.
Deposit date:2008-05-20
Release date:2008-12-09
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 73, 2008
1VF9
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SOLUTION STRUCTURE OF HUMAN TRF2
Descriptor:Telomeric repeat binding factor 2
Authors:Nishimura, Y., Hanaoka, S.
Deposit date:2004-04-12
Release date:2005-05-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
1VFC
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SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF2
Descriptor:Short G-rich strand, Short C-rich starnd, Telomeric repeat binding factor 2
Authors:Nishimura, Y., Hanaoka, S.
Deposit date:2004-04-12
Release date:2005-05-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
1MBE
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBF
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBG
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBH
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
Descriptor:C-MYB
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-09-15
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBJ
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBK
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MSE
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
Descriptor:DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), C-Myb DNA-Binding Domain
Authors:Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-01-24
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
1MSF
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
Descriptor:DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), C-Myb DNA-Binding Domain
Authors:Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-01-24
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
1D8J
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
Descriptor:GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
Authors:Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-25
Release date:2000-04-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
1D8K
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
Descriptor:GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
Authors:Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-25
Release date:2000-04-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
1VD4
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SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TFIIE ALPHA
Descriptor:Transcription initiation factor IIE, alpha subunit, ZINC ION
Authors:Okuda, M., Tanaka, A., Arai, Y., Satoh, M., Okamura, H., Nagadoi, A., Hanaoka, F., Ohkuma, Y., Nishimura, Y.
Deposit date:2004-03-18
Release date:2004-10-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.
J.Biol.Chem., 279, 2004
2RNZ
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SOLUTION STRUCTURE OF THE PRESUMED CHROMODOMAIN OF THE YEAST HISTONE ACETYLTRANSFERASE, ESA1
Descriptor:Histone acetyltransferase ESA1
Authors:Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.
Deposit date:2008-03-01
Release date:2008-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RO0
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SOLUTION STRUCTURE OF THE KNOTTED TUDOR DOMAIN OF THE YEAST HISTONE ACETYLTRANSFERASE, ESA1
Descriptor:Histone acetyltransferase ESA1
Authors:Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.
Deposit date:2008-03-01
Release date:2008-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RVQ
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SOLUTION STRUCTURE OF THE ISOLATED HISTONE H2A-H2B HETERODIMER
Descriptor:Histone H2A type 1-B/E, Histone H2B type 1-J
Authors:Moriwaki, Y., Yamane, T., Ohtomo, H., Ikeguchi, M., Kurita, J., Sato, M., Nagadoi, A., Shimojo, H., Nishimura, Y.
Deposit date:2016-03-28
Release date:2016-05-25
Method:SOLUTION NMR
Cite:Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
3J3Z
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STRUCTURE OF MA28-7 NEUTRALIZING ANTIBODY FAB FRAGMENT FROM ELECTRON CRYO-MICROSCOPY OF ENTEROVIRUS 71 COMPLEXED WITH A FAB FRAGMENT
Descriptor:MA28-7 neutralizing antibody light chain, MA28-7 neutralizing antibody heavy chain
Authors:Lee, H., Cifuente, J.O., Ashley, R.E., Conway, J.F., Makhov, A.M., Tano, Y., Shimizu, H., Nishimura, Y., Hafenstein, S.
Deposit date:2013-05-21
Release date:2013-08-28
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (23.4 Å)
Cite:A strain-specific epitope of enterovirus 71 identified by cryo-electron microscopy of the complex with fab from neutralizing antibody.
J.Virol., 87, 2013
5Y95
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HADDOCK MODEL OF MSIN3B PAH1 DOMAIN
Descriptor:Paired amphipathic helix protein Sin3b, propan-2-yl (3R,6S,9aS)-3-ethyl-8-(3-methylbutyl)-6-(2-methylsulfanylethyl)-4,7-bis(oxidanylidene)-9,9a-dihydro-6H-pyrazino[2,1-c][1,2,4]oxadiazine-1-carboxylate
Authors:Kurita, J., Hirao, Y., Nishimura, Y.
Deposit date:2017-08-22
Release date:2017-10-04
Last modified:2017-12-06
Method:SOLUTION NMR
Cite:A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models.
Bioorg. Med. Chem. Lett., 27, 2017
2RNQ
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SOLUTION STRUCTURE OF THE C-TERMINAL ACIDIC DOMAIN OF TFIIE ALPHA
Descriptor:Transcription initiation factor IIE subunit alpha
Authors:Okuda, M., Nishimura, Y.
Deposit date:2008-01-31
Release date:2008-04-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RNR
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN TFIIE ALPHA C-TERMINAL ACIDIC DOMAIN AND TFIIH P62 PH DOMAIN
Descriptor:Transcription initiation factor IIE subunit alpha, TFIIH basal transcription factor complex p62 subunit
Authors:Okuda, M., Nishimura, Y.
Deposit date:2008-01-31
Release date:2008-04-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RSN
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SOLUTION STRUCTURE OF THE CHROMODOMAIN OF CHP1 IN COMPLEX WITH H3K9ME3 PEPTIDE
Descriptor:Chromo domain-containing protein 1, peptide from Histone H3
Authors:Shimojo, H., Nishimura, Y.
Deposit date:2012-04-18
Release date:2012-08-29
Method:SOLUTION NMR
Cite:Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RSO
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SOLUTION STRUCTURE OF THE CHROMODOMAIN OF SWI6
Descriptor:Chromatin-associated protein swi6
Authors:Shimojo, H., Nishimura, Y.
Deposit date:2012-04-18
Release date:2012-08-29
Method:SOLUTION NMR
Cite:Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
5XV8
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN UVSSA ACIDIC REGION AND TFIIH P62 PH DOMAIN
Descriptor:UV-stimulated scaffold protein A, General transcription factor IIH subunit 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2017-06-27
Release date:2017-11-08
Last modified:2017-12-27
Method:SOLUTION NMR
Cite:Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways
Nucleic Acids Res., 45, 2017
1BA5
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DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES
Descriptor:HTRF1
Authors:Nishikawa, T., Nagadoi, A., Yoshimura, S., Aimoto, S., Nishimura, Y.
Deposit date:1998-04-22
Release date:1999-04-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA-binding domain of human telomeric protein, hTRF1.
Structure, 6, 1998
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