Author results

3VOC
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BETA-AMYLASE FROM PAENIBACILLUS POLYMYXA
Descriptor:Beta/alpha-amylase, CALCIUM ION, CHLORIDE ION, ...
Authors:Nishimura, S., Fujioka, T., Nakaniwa, T., Tada, T.
Deposit date:2012-01-21
Release date:2013-02-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural analysis by X-ray crystallography and small-angle scattering of the multi-domain beta-amylase from Paenibacillus polymyxa
To be Published
1BQT
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THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
Descriptor:INSULIN-LIKE GROWTH FACTOR-I
Authors:Sato, A., Nishimura, S., Ohkubo, T., Kyogoku, Y., Koyama, S., Kobayashi, M., Yasuda, T., Kobayashi, Y.
Deposit date:1998-08-18
Release date:1999-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional structure of human insulin-like growth factor-I (IGF-I) determined by 1H-NMR and distance geometry.
Int.J.Pept.Protein Res., 41, 1993
1AA9
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HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:C-HA-RAS, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Ito, Y., Yamasaki, Y., Muto, Y., Kawai, G., Nishimura, S., Miyazawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-01-27
Release date:1997-07-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
Biochemistry, 36, 1997
1IQ8
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CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE FROM PYROCOCCUS HORIKOSHII
Descriptor:ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE, ZINC ION, MAGNESIUM ION
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-07-09
Release date:2002-05-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT7
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CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH GUANINE
Descriptor:Archaeosine tRNA-guanine transglycosylase, ZINC ION, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT8
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CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH ARCHAEOSINE PRECURSOR, PREQ0
Descriptor:archaeosine tRNA-guanine transglycosylase, ZINC ION, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1ITC
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BETA-AMYLASE FROM BACILLUS CEREUS VAR. MYCOIDES COMPLEXED WITH MALTOPENTAOSE
Descriptor:Beta-Amylase, ALPHA-D-GLUCOSE, CALCIUM ION, ...
Authors:Miyake, H., Kurisu, G., Kusunoki, M., Nishimura, S., Kitamura, S., Nitta, Y.
Deposit date:2002-01-17
Release date:2003-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of a Catalytic Site Mutant of beta-Amylase from Bacillus cereus var. mycoides Cocrystallized with Maltopentaose
BIOCHEMISTRY, 42, 2003
1J18
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CRYSTAL STRUCTURE OF A BETA-AMYLASE FROM BACILLUS CEREUS VAR. MYCOIDES COCRYSTALLIZED WITH MALTOSE
Descriptor:Beta-amylase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Miyake, H., Kurisu, G., Kusunoki, M., Nishimura, S., Kitamura, S., Nitta, Y.
Deposit date:2002-12-02
Release date:2003-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a Catalytic Site Mutant of beta-Amylase from Bacillus cereus var. mycoides Cocrystallized with Maltopentaose
BIOCHEMISTRY, 42, 2003
1J2B
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CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH LAMBDA-FORM TRNA(VAL)
Descriptor:tRNA(Val), Archaeosine tRNA-guanine transglycosylase, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-29
Release date:2003-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme
Cell(Cambridge,Mass.), 113, 2003
1VBM
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CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI TYROSYL-TRNA SYNTHETASE COMPLEXED WITH TYR-AMS
Descriptor:Tyrosyl-tRNA synthetase, SULFATE ION, 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE
Authors:Kobayashi, T., Sakamoto, K., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-27
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural snapshots of the KMSKS loop rearrangement for amino acid activation by bacterial tyrosyl-tRNA synthetase.
J.Mol.Biol., 346, 2005
1VBN
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ESCHERICHIA COLI TYROSYL-TRNA SYNTHETASE MUTANT COMPLEXED WITH TYR-AMS
Descriptor:Tyrosyl-tRNA synthetase, 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE
Authors:Kobayashi, T., Sakamoto, K., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-27
Release date:2005-01-25
Last modified:2016-09-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion
Proc.Natl.Acad.Sci.USA, 102, 2005
1WQ3
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ESCHERICHIA COLI TYROSYL-TRNA SYNTHETASE MUTANT COMPLEXED WITH 3-IODO-L-TYROSINE
Descriptor:Tyrosyl-tRNA synthetase, 3-IODO-TYROSINE
Authors:Kobayashi, T., Sakamoto, K., Nureki, O., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-09-20
Release date:2005-01-25
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion
Proc.Natl.Acad.Sci.USA, 102, 2005
1WQ4
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ESCHERICHIA COLI TYROSYL-TRNA SYNTHETASE MUTANT COMPLEXED WITH L-TYROSINE
Descriptor:Tyrosyl-tRNA synthetase, TYROSINE
Authors:Kobayashi, T., Sakamoto, K., Nureki, O., Takimura, T., Kamata, K., Sekine, R., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-09-20
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion
Proc.Natl.Acad.Sci.USA, 102, 2005
1X8X
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TYROSYL T-RNA SYNTHETASE FROM E.COLI COMPLEXED WITH TYROSINE
Descriptor:Tyrosyl-tRNA synthetase, SULFATE ION, TYROSINE
Authors:Kobayashi, T., Takimura, T., Sekine, R., Kelly, V.P., Kamata, K., Sakamoto, K., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-19
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Snapshots of the KMSKS Loop Rearrangement for Amino Acid Activation by Bacterial Tyrosyl-tRNA Synthetase
J.MOL.BIOL., 346, 2005
2RNG
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SOLUTION STRUCTURE OF BIG DEFENSIN
Descriptor:Big defensin
Authors:Kouno, T., Fujitani, N., Osaki, T., Kawabata, S., Nishimura, S., Mizuguchi, M., Aizawa, T., Demura, M., Nitta, K., Kawano, K.
Deposit date:2007-12-27
Release date:2008-10-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria
Biochemistry, 47, 2008
2RV9
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SOLUTION STRUCTURE OF CHITOSAN-BINDING MODULE 1 DERIVED FROM CHITOSANASE/GLUCANASE FROM PAENIBACILLUS SP. IK-5
Descriptor:Glucanase
Authors:Shinya, S., Nishimura, S., Fukamizo, T.
Deposit date:2015-05-12
Release date:2016-04-06
Method:SOLUTION NMR
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 2016
2RVA
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SOLUTION STRUCTURE OF CHITOSAN-BINDING MODULE 2 DERIVED FROM CHITOSANASE/GLUCANASE FROM PAENIBACILLUS SP. IK-5
Descriptor:Glucanase
Authors:Shinya, S., Nishimura, S., Fukamizo, T.
Deposit date:2015-05-13
Release date:2016-04-06
Method:SOLUTION NMR
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 2016
5X7Y
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CRYSTAL STRUCTURE OF THE DOG LIPOCALIN ALLERGEN CAN F 6
Descriptor:Lipocalin-Can f 6 allergen, DI(HYDROXYETHYL)ETHER
Authors:Yamamoto, K., Otani, T., Sugiura, K., Nakatsuji, M., Nishimura, S., Inui, T.
Deposit date:2017-02-28
Release date:2018-04-04
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4.
Sci Rep, 9, 2019
5X8O
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CRYSTAL STRUCTURE OF GMP REDUCTASE FROM TRYPANOSOMA BRUCEI WITH GUANOSINE 5'-TRIPHOSPHATE
Descriptor:Inosine-5'-monophosphate dehydrogenase, GUANOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION
Authors:Otani, T., Imamura, A., Sugiyama, S., Nishimura, S., Inui, T.
Deposit date:2017-03-03
Release date:2018-03-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of GMP reductase from Trypanosoma brucei with guanosine 5'-triphosphate
To Be Published
2RQ0
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SOLUTION STRUCTURE OF MOUSE LIPOCALIN-TYPE PROSTAGLANDIN D SYNTHASE POSSESSING THE INTRINSIC DISULFIDE BOND
Descriptor:Prostaglandin-H2 D-isomerase
Authors:Miyamoto, Y., Nishimura, S., Inui, T.
Deposit date:2008-12-24
Release date:2009-12-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural analysis of lipocalin-type prostaglandin D synthase complexed with biliverdin by small-angle X-ray scattering and multi-dimensional NMR.
J.Struct.Biol., 2009
1GIH
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HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR
Descriptor:CELL DIVISION PROTEIN KINASE 2, 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-PYRIDIN-2-YL-UREA
Authors:Ikuta, M., Nishimura, S.
Deposit date:2001-02-06
Release date:2002-02-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic approach to identification of cyclin-dependent kinase 4 (CDK4)-specific inhibitors by using CDK4 mimic CDK2 protein.
J.Biol.Chem., 276, 2001
1GII
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HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR
Descriptor:CELL DIVISION PROTEIN KINASE 2, 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-PYRIDIN-2-YL-UREA
Authors:Ikuta, M., Nishimura, S.
Deposit date:2001-02-06
Release date:2002-02-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic approach to identification of cyclin-dependent kinase 4 (CDK4)-specific inhibitors by using CDK4 mimic CDK2 protein.
J.Biol.Chem., 276, 2001
1GIJ
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HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR
Descriptor:CELL DIVISION PROTEIN KINASE 2, 1-(5-OXO-2,3,5,9B-TETRAHYDRO-1H-PYRROLO[2,1-A]ISOINDOL-9-YL)-3-(5-PYRROLIDIN-2-YL-1H-PYRAZOL-3-YL)-UREA
Authors:Ikuta, M., Nishimura, S.
Deposit date:2001-02-06
Release date:2002-02-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystallographic approach to identification of cyclin-dependent kinase 4 (CDK4)-specific inhibitors by using CDK4 mimic CDK2 protein.
J.Biol.Chem., 276, 2002
2LAA
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SOLUTION STRUCUTURE OF THE CBM25-1 OF BETA/ALPHA-AMYLASE FROM PAENIBACILLUS POLYMYXA
Descriptor:Beta/alpha-amylase
Authors:Horibe, I., Nishimura, S., Takahashi, R., Ohkubo, T., Yoshida, T.
Deposit date:2011-03-09
Release date:2012-04-04
Method:SOLUTION NMR
Cite:A functional and structural analysis of tundem family 25 carbohydrate-binding modules from Paenibacillus polymyxa beta/alpha-amylase
To be Published
2LAB
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SOLUTION STRUCUTURE OF THE CBM25-2 OF BETA/ALPHA-AMYLASE FROM PAENIBACILLUS POLYMYXA
Descriptor:Beta/alpha-amylase
Authors:Takahashi, R., Nishimura, S., Ohkubo, T., Yoshida, T.
Deposit date:2011-03-09
Release date:2012-04-04
Method:SOLUTION NMR
Cite:A functional and structural analysis of tundem family 25 carbohydrate-binding modules from Paenibacillus polymyxa beta/alpha-amylase
To be Published
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