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1MSE
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
Descriptor:DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), C-Myb DNA-Binding Domain
Authors:Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-01-24
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
1MSF
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
Descriptor:DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), C-Myb DNA-Binding Domain
Authors:Ogata, K., Morikawa, S., Nakamura, H., Sekikawa, A., Inoue, T., Kanai, H., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-01-24
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
1PRU
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1PRV
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1MBE
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBF
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBG
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBH
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
Descriptor:C-MYB
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-09-15
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBJ
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBK
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Descriptor:MYB PROTO-ONCOGENE PROTEIN
Authors:Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
Deposit date:1995-05-19
Release date:1995-07-31
Last modified:2012-02-29
Method:SOLUTION NMR
Cite:Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1IDY
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STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Authors:Furukawa, K., Oda, M., Nakamura, H.
Deposit date:1996-08-15
Release date:1996-12-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A small engineered protein lacks structural uniqueness by increasing the side-chain conformational entropy.
Proc.Natl.Acad.Sci.USA, 93, 1996
1IDZ
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STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, 20 STRUCTURES
Descriptor:MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Authors:Furukawa, K., Oda, M., Nakamura, H.
Deposit date:1996-08-15
Release date:1996-12-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A small engineered protein lacks structural uniqueness by increasing the side-chain conformational entropy.
Proc.Natl.Acad.Sci.USA, 93, 1996
1ODD
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OMPR C-TERMINAL DOMAIN (OMPR-C) FROM ESCHERICHIA COLI
Descriptor:TRANSCRIPTIONAL REGULATORY PROTEIN OMPR
Authors:Kondou, H., Nakagawa, A., Tanaka, I.
Deposit date:1996-10-31
Release date:1997-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site.
Nat.Struct.Biol., 4, 1997
1BA5
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DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES
Descriptor:HTRF1
Authors:Nishikawa, T., Nagadoi, A., Yoshimura, S., Aimoto, S., Nishimura, Y.
Deposit date:1998-04-22
Release date:1999-04-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA-binding domain of human telomeric protein, hTRF1.
Structure, 6, 1998
1BHI
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STRUCTURE OF TRANSACTIVATION DOMAIN OF CRE-BP1/ATF-2, NMR, 20 STRUCTURES
Descriptor:CRE-BP1
Authors:Nagadoi, A., Nakazawa, K., Uda, H., Maekawa, T., Ishii, S., Nishimura, Y.
Deposit date:1998-06-09
Release date:1999-06-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain.
J.Mol.Biol., 287, 1999
1QQI
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SOLUTION STRUCTURE OF THE DNA-BINDING AND TRANSACTIVATION DOMAIN OF PHOB FROM ESCHERICHIA COLI
Descriptor:PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB
Authors:Okamura, H., Hanaoka, S., Nagadoi, A., Makino, K., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-06-07
Release date:2000-06-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box.
J.Mol.Biol., 295, 2000
1D8J
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
Descriptor:GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
Authors:Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-25
Release date:2000-04-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
1D8K
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
Descriptor:GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
Authors:Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-25
Release date:2000-04-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
1FEX
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SOLUTION STRUCTURE OF MYB-DOMAIN OF HUMAN RAP1
Descriptor:TRF2-INTERACTING TELOMERIC RAP1 PROTEIN
Authors:Hanaoka, S., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-07-24
Release date:2001-09-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains.
J.Mol.Biol., 312, 2001
1ITY
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SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRF1
Descriptor:TRF1
Authors:Nishikawa, T., Okamura, H., Nagadoi, A., Konig, P., Rhodes, D., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-02-15
Release date:2002-03-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a telomeric DNA complex of human TRF1
Structure, 9, 2001
1IV6
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SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF1
Descriptor:5'-D(*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3', 5'-D(*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3', TELOMERIC REPEAT BINDING FACTOR 1
Authors:Nishikawa, T., Okamura, H., Nagadoi, A., Konig, P., Rhodes, D., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-14
Release date:2002-04-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a telomeric DNA complex of human TRF1.
Structure, 9, 2001
1J05
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THE CRYSTAL STRUCTURE OF ANTI-CARCINOEMBRYONIC ANTIGEN MONOCLONAL ANTIBODY T84.66 FV FRAGMENT
Descriptor:anti-CEA mAb T84.66, light chain, heavy chain, ...
Authors:Kondo, H., Nishimura, Y., Shiroishi, M., Asano, R., Noro, N., Tsumoto, K., Kumagai, I.
Deposit date:2002-11-01
Release date:2003-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
To be Published
1VD4
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SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TFIIE ALPHA
Descriptor:Transcription initiation factor IIE, alpha subunit, ZINC ION
Authors:Okuda, M., Tanaka, A., Arai, Y., Satoh, M., Okamura, H., Nagadoi, A., Hanaoka, F., Ohkuma, Y., Nishimura, Y.
Deposit date:2004-03-18
Release date:2004-10-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.
J.Biol.Chem., 279, 2004
1VF9
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SOLUTION STRUCTURE OF HUMAN TRF2
Descriptor:Telomeric repeat binding factor 2
Authors:Nishimura, Y., Hanaoka, S.
Deposit date:2004-04-12
Release date:2005-05-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
1VFC
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SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF2
Descriptor:Short G-rich strand, Short C-rich starnd, Telomeric repeat binding factor 2
Authors:Nishimura, Y., Hanaoka, S.
Deposit date:2004-04-12
Release date:2005-05-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
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