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1UMG
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BU of 1umg by Molmil
Crystal structure of fructose-1,6-bisphosphatase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM), 385aa long conserved hypothetical protein, ...
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2003-09-30
Release date:2004-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The first crystal structure of the novel class of fructose-1,6-bisphosphatase present in thermophilic archaea.
Structure, 12, 2004
3G5S
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BU of 3g5s by Molmil
Crystal structure of Thermus thermophilus TrmFO in complex with glutathione
Descriptor: 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE, ...
Authors:Nishimasu, H, Ishitani, R, Hori, H, Nureki, O.
Deposit date:2009-02-05
Release date:2009-05-19
Last modified:2011-12-14
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase
Proc.Natl.Acad.Sci.USA, 106, 2009
3G5Q
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BU of 3g5q by Molmil
Crystal structure of Thermus thermophilus TrmFO
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
Authors:Nishimasu, H, Ishitani, R, Hori, H, Nureki, O.
Deposit date:2009-02-05
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase
Proc.Natl.Acad.Sci.USA, 106, 2009
3G5R
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BU of 3g5r by Molmil
Crystal structure of Thermus thermophilus TrmFO in complex with tetrahydrofolate
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Nishimasu, H, Ishitani, R, Hori, H, Nureki, O.
Deposit date:2009-02-05
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase
Proc.Natl.Acad.Sci.USA, 106, 2009
4OO8
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BU of 4oo8 by Molmil
Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(*CP*CP*AP*GP*CP*CP*AP*AP*GP*CP*GP*CP*AP*CP*CP*TP*AP*AP*TP*TP*TP*CP*C)-3'), RNA (97-MER)
Authors:Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2014-01-31
Release date:2014-02-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Cas9 in complex with guide RNA and target DNA
Cell(Cambridge,Mass.), 156, 2014
2E2P
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BU of 2e2p by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in complex with ADP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, HEXOKINASE, ...
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
2E2Q
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BU of 2e2q by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in complex with xylose, Mg2+, and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, HEXOKINASE, MAGNESIUM ION, ...
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
2E2N
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BU of 2e2n by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in the apo form
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEXOKINASE, SULFATE ION
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
2E2O
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BU of 2e2o by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in complex with glucose
Descriptor: HEXOKINASE, beta-D-glucopyranose
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
4GEL
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BU of 4gel by Molmil
Crystal structure of Zucchini
Descriptor: 1,2-ETHANEDIOL, Mitochondrial cardiolipin hydrolase, PHOSPHATE ION, ...
Authors:Nishimasu, H, Fukuhara, S, Ishitani, R, Nureki, O.
Deposit date:2012-08-02
Release date:2012-10-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.756 Å)
Cite:Structure and function of Zucchini endoribonuclease in piRNA biogenesis
Nature, 491, 2012
4GEN
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BU of 4gen by Molmil
Crystal structure of Zucchini (monomer)
Descriptor: CHLORIDE ION, Mitochondrial cardiolipin hydrolase
Authors:Nishimasu, H, Fukuhara, S, Ishitani, R, Nureki, O.
Deposit date:2012-08-02
Release date:2012-10-17
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function of Zucchini endoribonuclease in piRNA biogenesis
Nature, 491, 2012
4GEM
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BU of 4gem by Molmil
Crystal structure of Zucchini (K171A)
Descriptor: 1,2-ETHANEDIOL, Mitochondrial cardiolipin hydrolase, ZINC ION
Authors:Nishimasu, H, Fukuhara, S, Ishitani, R, Nureki, O.
Deposit date:2012-08-02
Release date:2012-10-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.206 Å)
Cite:Structure and function of Zucchini endoribonuclease in piRNA biogenesis
Nature, 491, 2012
3NKM
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BU of 3nkm by Molmil
Crystal structure of mouse autotaxin
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nishimasu, H, Ishitani, R, Mihara, E, Takagi, J, Aoki, J, Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKN
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BU of 3nkn by Molmil
Crystal structure of mouse autotaxin in complex with 14:0-LPA
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nishimasu, H, Ishitani, R, Mihara, E, Takagi, J, Aoki, J, Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKQ
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BU of 3nkq by Molmil
Crystal structure of mouse autotaxin in complex with 18:3-LPA
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E,12Z,15Z)-octadeca-9,12,15-trienoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nishimasu, H, Ishitani, R, Mihara, E, Takagi, J, Aoki, J, Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKO
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BU of 3nko by Molmil
Crystal structure of mouse autotaxin in complex with 16:0-LPA
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nishimasu, H, Ishitani, R, Mihara, E, Takagi, J, Aoki, J, Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKP
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BU of 3nkp by Molmil
Crystal structure of mouse autotaxin in complex with 18:1-LPA
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nishimasu, H, Ishitani, R, Mihara, E, Takagi, J, Aoki, J, Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
3NKR
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BU of 3nkr by Molmil
Crystal structure of mouse autotaxin in complex with 22:6-LPA
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl (4Z,7E,10E,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nishimasu, H, Ishitani, R, Mihara, E, Takagi, J, Aoki, J, Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
6AI6
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BU of 6ai6 by Molmil
Crystal structure of SpCas9-NG
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9/Csn1, DNA (28-MER), ...
Authors:Nishimasu, H, Hirano, S, Ishitani, R, Nureki, O.
Deposit date:2018-08-21
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Engineered CRISPR-Cas9 nuclease with expanded targeting space
Science, 361, 2018
5AXW
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BU of 5axw by Molmil
Crystal structure of Staphylococcus aureus Cas9 in complex with sgRNA and target DNA (TTGGGT PAM)
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, DNA (28-MER), ...
Authors:Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2015-08-01
Release date:2015-09-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Staphylococcus aureus Cas9.
Cell, 162, 2015
5CZZ
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BU of 5czz by Molmil
Crystal structure of Staphylococcus aureus Cas9 in complex with sgRNA and target DNA (TTGAAT PAM)
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, DNA (28-MER), ...
Authors:Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2015-08-01
Release date:2015-09-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Staphylococcus aureus Cas9.
Cell, 162, 2015
5XH7
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BU of 5xh7 by Molmil
Crystal structure of the Acidaminococcus sp. BV3L6 Cpf1 RR variant in complex with crRNA and target DNA (TCCA PAM)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CRISPR-associated endonuclease Cpf1, ...
Authors:Nishimasu, H, Yamano, T, Ishitani, R, Nureki, O.
Deposit date:2017-04-19
Release date:2017-06-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Altered PAM Recognition by Engineered CRISPR-Cpf1
Mol. Cell, 67, 2017
5XH6
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BU of 5xh6 by Molmil
Crystal structure of the Acidaminococcus sp. BV3L6 Cpf1 RVR variant in complex with crRNA and target DNA (TATA PAM)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CRISPR-associated endonuclease Cpf1, ...
Authors:Nishimasu, H, Yamano, T, Ishitani, R, Nureki, O.
Deposit date:2017-04-19
Release date:2017-06-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Altered PAM Recognition by Engineered CRISPR-Cpf1
Mol. Cell, 67, 2017
4ZOH
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BU of 4zoh by Molmil
Crystal structure of glyceraldehyde oxidoreductase
Descriptor: ACETIC ACID, DI(HYDROXYETHYL)ETHER, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Nishimasu, H, Fushinobu, S, Wakagi, T.
Deposit date:2015-05-06
Release date:2016-02-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Archaeal Mo-Containing Glyceraldehyde Oxidoreductase Isozymes Exhibit Diverse Substrate Specificities through Unique Subunit Assemblies.
Plos One, 11, 2016
6LEH
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BU of 6leh by Molmil
Crystal structure of Autotaxin in complex with an inhibitor
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Nishimasu, H, Osamu, N.
Deposit date:2019-11-25
Release date:2020-03-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of PotentIn VivoAutotaxin Inhibitors that Bind to Both Hydrophobic Pockets and Channels in the Catalytic Domain.
J.Med.Chem., 63, 2020

 

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