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6VZC
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BU of 6vzc by Molmil
Tandem UU:GA mismatch within an RNA helix
Descriptor: RNA 28-mer
Authors:Nikonowicz, E.P, Chang, A.T.
Deposit date:2020-02-28
Release date:2020-09-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:2-Amino-1,3-benzothiazole-6-carboxamide Preferentially Binds the Tandem Mismatch Motif r(UY:GA).
Biochemistry, 59, 2020
2LV0
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BU of 2lv0 by Molmil
Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA
Descriptor: RNA (5'-R(*GP*GP*GP*CP*UP*AP*AP*UP*GP*UP*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3')
Authors:Nikonowicz, E.P, Wang, J, Moran, S, Donarski, J.
Deposit date:2012-06-26
Release date:2013-06-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA
To be Published
17RA
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BU of 17ra by Molmil
BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES
Descriptor: RNA
Authors:Nikonowicz, E.P, Smith, J.S.
Deposit date:1998-08-04
Release date:1999-04-20
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein.
Biochemistry, 37, 1998
5UF3
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BU of 5uf3 by Molmil
Structure Effects of the Four-Adenine Loop of the Coliphage GA Replicase RNA Operator
Descriptor: phage GA operator RNA hairpin
Authors:Chang, A.T, Tran, M, DeJong, E, Nikonowicz, E.P.
Deposit date:2017-01-03
Release date:2017-05-31
Last modified:2017-07-26
Method:SOLUTION NMR
Cite:Structure and Dynamics of the Tetra-A Loop and (A-A)-U Sequence Motif within the Coliphage GA Replicase RNA Operator.
Biochemistry, 56, 2017
4PDB
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BU of 4pdb by Molmil
CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER
Descriptor: 30S ribosomal protein S8, SELEX RNA aptamer
Authors:Davlieva, M, Shamoo, Y, Nikonowicz, E.P.
Deposit date:2014-04-17
Release date:2014-09-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.
Nucleic Acids Res., 42, 2014
2AWQ
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BU of 2awq by Molmil
Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe
Descriptor: 5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3'
Authors:Cabello-Villegas, J, Nikonowicz, E.P.
Deposit date:2005-09-01
Release date:2006-01-17
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe.
Nucleic Acids Res., 33, 2005
2LA9
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BU of 2la9 by Molmil
NMR structure of Pseudouridine_ASL_Tyr
Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*(PSU)P*CP*CP*CP*C)-3')
Authors:Denmon, A.P, Wang, J, Nikonowicz, E.P.
Deposit date:2011-03-09
Release date:2011-08-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LBQ
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BU of 2lbq by Molmil
NMR structure of i6A37_tyrASL
Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*UP*CP*CP*CP*C)-3')
Authors:Denmon, A.P, Wang, J, Nikonowicz, E.P.
Deposit date:2011-04-05
Release date:2011-08-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LBL
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BU of 2lbl by Molmil
Unmodified Glycyl-tRNA(UCC) anticodon stem-loop from Bacillus subtilis
Descriptor: RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*AP*AP*GP*UP*CP*UP*C)-3')
Authors:Chang, A.T, Nikonowicz, E.P.
Deposit date:2011-03-31
Release date:2012-04-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
2LBK
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BU of 2lbk by Molmil
Glycyl-tRNA(UCC)1B anticodon stem-loop from Staphylococcus epidermidis
Descriptor: RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3')
Authors:Chang, A.T, Nikonowicz, E.P.
Deposit date:2011-03-31
Release date:2012-04-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
2LBR
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BU of 2lbr by Molmil
Conformation Effects of Base Modification on the Anticodon Stem-loop of Bacillus subtilis tRNATYR
Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*(PSU)P*CP*CP*CP*C)-3')
Authors:Denmon, A.P, Wang, J, Nikonowicz, E.P.
Deposit date:2011-04-05
Release date:2011-08-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LAC
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BU of 2lac by Molmil
NMR structure of unmodified_ASL_Tyr
Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*UP*CP*CP*CP*C)-3')
Authors:Denmon, A.P, Wang, J, Nikonowicz, E.P.
Deposit date:2011-03-10
Release date:2011-08-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LBJ
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BU of 2lbj by Molmil
Glycyl-tRNA(GCC) anticodon stem-loop from Bacillus subtilis
Descriptor: RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')
Authors:Chang, A.T, Nikonowicz, E.P.
Deposit date:2011-03-31
Release date:2012-04-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
1J4Y
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BU of 1j4y by Molmil
Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe)
Descriptor: anticodon stem-loop of tRNA(Phe)
Authors:Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P.
Deposit date:2001-12-12
Release date:2002-07-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
J.Mol.Biol., 319, 2002
1JU7
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BU of 1ju7 by Molmil
NMR Solution Structure of the RNA Hairpin Binding Site for the Histone Stem-loop Binding Protein
Descriptor: 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3'
Authors:DeJong, E.S, Marzluff, W.F, Nikonowicz, E.P.
Deposit date:2001-08-23
Release date:2002-03-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein.
RNA, 8, 2002
1JWC
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BU of 1jwc by Molmil
NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN
Descriptor: 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3'
Authors:Dejong, E.S, Marzluff, W.F, Nikonowicz, E.P.
Deposit date:2001-09-03
Release date:2002-03-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein.
RNA, 8, 2002
1KKA
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BU of 1kka by Molmil
Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe)
Descriptor: anticodon stem-loop of tRNA(PHE)
Authors:Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P.
Deposit date:2001-12-06
Release date:2002-07-17
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
J.Mol.Biol., 319, 2002
1BGZ
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BU of 1bgz by Molmil
S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES
Descriptor: RNA
Authors:Kalurachchi, K, Nikonowicz, E.P.
Deposit date:1998-06-03
Release date:1999-01-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA.
J.Mol.Biol., 280, 1998
1D0T
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BU of 1d0t by Molmil
SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor: PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S, Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
1D0U
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BU of 1d0u by Molmil
SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor: PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S, Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
2LUN
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BU of 2lun by Molmil
RNA Aptamer for B. anthracis Ribosomal Protein S8
Descriptor: RNA (28-MER)
Authors:Nikonowicz, E.P, Wang, J.
Deposit date:2012-06-18
Release date:2013-12-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
2GBH
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BU of 2gbh by Molmil
NMR structure of stem region of helix-35 of 23S E.coli ribosomal RNA (residues 736-760)
Descriptor: 5'-R(*(GMP)P*GP*GP*CP*UP*AP*AP*UP*GP*(PSU)P*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3'
Authors:Bax, A, Boisbouvier, J, Bryce, D, Grishaev, A, Jaroniec, C, Miclet, E, Nikonovicz, E, O'Neil-Cabello, E, Ying, J.
Deposit date:2006-03-10
Release date:2006-04-11
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Measurement of five dipolar couplings from a single 3D NMR multiplet applied to the study of RNA dynamics.
J.Am.Chem.Soc., 126, 2004
2KHY
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BU of 2khy by Molmil
Specifier Domain of B. subtilis tyrS T box leader RNA
Descriptor: RNA (38-MER)
Authors:Wang, J, Henkin, T.M.
Deposit date:2009-04-14
Release date:2010-02-16
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA.
Nucleic Acids Res., 38, 2010
1I6U
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BU of 1i6u by Molmil
RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII
Descriptor: 16S RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S8P, SULFATE ION
Authors:Tishchenko, S, Nikulin, A, Fomenkova, N, Nevskaya, N, Nikonov, O, Dumas, P, Moine, H, Ehresmann, B, Ehresmann, C, Piendl, W, Lamzin, V, Garber, M, Nikonov, S.
Deposit date:2001-03-05
Release date:2001-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
J.Mol.Biol., 311, 2001

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