Author results

17RA
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BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES
Descriptor:RNA
Authors:Nikonowicz, E.P., Smith, J.S.
Deposit date:1998-08-04
Release date:1999-04-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein.
Biochemistry, 37, 1998
2LV0
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SOLUTION STRUCTURE OF HELIX-35 STEM-LOOP FROM E. COLI 23S RRNA
Descriptor:RNA (5'-R(*GP*GP*GP*CP*UP*AP*AP*UP*GP*UP*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3')
Authors:Nikonowicz, E.P., Wang, J., Moran, S., Donarski, J.
Deposit date:2012-06-26
Release date:2013-06-26
Method:SOLUTION NMR
Cite:Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA
To be Published
1BGZ
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S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES
Descriptor:RNA
Authors:Kalurachchi, K., Nikonowicz, E.P.
Deposit date:1998-06-03
Release date:1999-01-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA.
J.Mol.Biol., 280, 1998
1D0T
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SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor:PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S., Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
1D0U
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SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor:PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S., Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
1J4Y
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SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE)
Descriptor:anticodon stem-loop of tRNA(Phe)
Authors:Cabello-Villegas, J., Winkler, M.E., Nikonowicz, E.P.
Deposit date:2001-12-12
Release date:2002-07-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
J.Mol.Biol., 319, 2002
1JU7
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NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN
Descriptor:5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3'
Authors:DeJong, E.S., Marzluff, W.F., Nikonowicz, E.P.
Deposit date:2001-08-23
Release date:2002-03-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein.
RNA, 8, 2002
1JWC
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NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN
Descriptor:5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3'
Authors:Dejong, E.S., Marzluff, W.F., Nikonowicz, E.P.
Deposit date:2001-09-03
Release date:2002-03-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein.
RNA, 8, 2002
1KKA
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SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE)
Descriptor:anticodon stem-loop of tRNA(PHE)
Authors:Cabello-Villegas, J., Winkler, M.E., Nikonowicz, E.P.
Deposit date:2001-12-06
Release date:2002-07-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
J.Mol.Biol., 319, 2002
2AWQ
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SOLUTION STRUCTURE OF PSEUDOURIDINE-32 MODIFIED ANTICODON STEM-LOOP OF E. COLI TRNAPHE
Descriptor:5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3'
Authors:Cabello-Villegas, J., Nikonowicz, E.P.
Deposit date:2005-09-01
Release date:2006-01-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe.
Nucleic Acids Res., 33, 2005
2LA9
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NMR STRUCTURE OF PSEUDOURIDINE_ASL_TYR
Descriptor:RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*(PSU)P*CP*CP*CP*C)-3')
Authors:Denmon, A.P., Wang, J., Nikonowicz, E.P.
Deposit date:2011-03-09
Release date:2011-08-03
Last modified:2011-09-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LAC
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NMR STRUCTURE OF UNMODIFIED_ASL_TYR
Descriptor:RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*UP*CP*CP*CP*C)-3')
Authors:Denmon, A.P., Wang, J., Nikonowicz, E.P.
Deposit date:2011-03-10
Release date:2011-08-03
Last modified:2011-09-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LBJ
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GLYCYL-TRNA(GCC) ANTICODON STEM-LOOP FROM BACILLUS SUBTILIS
Descriptor:RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')
Authors:Chang, A.T., Nikonowicz, E.P.
Deposit date:2011-03-31
Release date:2012-04-04
Last modified:2012-05-16
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
2LBK
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GLYCYL-TRNA(UCC)1B ANTICODON STEM-LOOP FROM STAPHYLOCOCCUS EPIDERMIDIS
Descriptor:RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3')
Authors:Chang, A.T., Nikonowicz, E.P.
Deposit date:2011-03-31
Release date:2012-04-04
Last modified:2012-05-16
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
2LBL
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UNMODIFIED GLYCYL-TRNA(UCC) ANTICODON STEM-LOOP FROM BACILLUS SUBTILIS
Descriptor:RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*AP*AP*GP*UP*CP*UP*C)-3')
Authors:Chang, A.T., Nikonowicz, E.P.
Deposit date:2011-03-31
Release date:2012-04-04
Last modified:2012-05-16
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
2LBQ
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NMR STRUCTURE OF I6A37_TYRASL
Descriptor:RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*UP*CP*CP*CP*C)-3')
Authors:Denmon, A.P., Wang, J., Nikonowicz, E.P.
Deposit date:2011-04-05
Release date:2011-08-03
Last modified:2011-09-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LBR
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CONFORMATION EFFECTS OF BASE MODIFICATION ON THE ANTICODON STEM-LOOP OF BACILLUS SUBTILIS TRNATYR
Descriptor:RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*(PSU)P*CP*CP*CP*C)-3')
Authors:Denmon, A.P., Wang, J., Nikonowicz, E.P.
Deposit date:2011-04-05
Release date:2011-08-03
Last modified:2011-09-14
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
4PDB
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CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER
Descriptor:30S ribosomal protein S8, SELEX RNA aptamer
Authors:Davlieva, M., Shamoo, Y., Nikonowicz, E.P.
Deposit date:2014-04-17
Release date:2014-09-03
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.
Nucleic Acids Res., 42, 2014
5UF3
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STRUCTURE EFFECTS OF THE FOUR-ADENINE LOOP OF THE COLIPHAGE GA REPLICASE RNA OPERATOR
Descriptor:phage GA operator RNA hairpin
Authors:Chang, A.T., Tran, M., DeJong, E., Nikonowicz, E.P.
Deposit date:2017-01-03
Release date:2017-05-31
Last modified:2017-07-26
Method:SOLUTION NMR
Cite:Structure and Dynamics of the Tetra-A Loop and (A-A)-U Sequence Motif within the Coliphage GA Replicase RNA Operator.
Biochemistry, 56, 2017
2LUN
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RNA APTAMER FOR B. ANTHRACIS RIBOSOMAL PROTEIN S8
Descriptor:RNA (28-MER)
Authors:Nikonowicz, E.P., Wang, J.
Deposit date:2012-06-18
Release date:2013-12-18
Last modified:2018-04-18
Method:SOLUTION NMR
Cite:Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
2GBH
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NMR STRUCTURE OF STEM REGION OF HELIX-35 OF 23S E.COLI RIBOSOMAL RNA (RESIDUES 736-760)
Descriptor:5'-R(*(GMP)P*GP*GP*CP*UP*AP*AP*UP*GP*(PSU)P*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3'
Authors:Bax, A., Boisbouvier, J., Bryce, D., Grishaev, A., Jaroniec, C., Miclet, E., Nikonovicz, E., O'Neil-Cabello, E., Ying, J.
Deposit date:2006-03-10
Release date:2006-04-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Measurement of five dipolar couplings from a single 3D NMR multiplet applied to the study of RNA dynamics.
J.Am.Chem.Soc., 126, 2004
2KHY
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SPECIFIER DOMAIN OF B. SUBTILIS TYRS T BOX LEADER RNA
Descriptor:RNA (38-MER)
Authors:Wang, J., Henkin, T.M.
Deposit date:2009-04-14
Release date:2010-02-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA.
Nucleic Acids Res., 38, 2010
1I6U
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RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII
Descriptor:16S RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S8P, SULFATE ION
Authors:Tishchenko, S., Nikulin, A., Fomenkova, N., Nevskaya, N., Nikonov, O., Dumas, P., Moine, H., Ehresmann, B., Ehresmann, C., Piendl, W., Lamzin, V., Garber, M., Nikonov, S.
Deposit date:2001-03-05
Release date:2001-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
J.Mol.Biol., 311, 2001