Author results

1I6U
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RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII
Descriptor:16S RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S8P, SULFATE ION
Authors:Tishchenko, S., Nikulin, A., Fomenkova, N., Nevskaya, N., Nikonov, O., Dumas, P., Moine, H., Ehresmann, B., Ehresmann, C., Piendl, W., Lamzin, V., Garber, M., Nikonov, S.
Deposit date:2001-03-05
Release date:2001-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
J.Mol.Biol., 311, 2001
1ZHO
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THE STRUCTURE OF A RIBOSOMAL PROTEIN L1 IN COMPLEX WITH MRNA
Descriptor:mRNA, 50S ribosomal protein L1, POTASSIUM ION
Authors:Nevskaya, N., Tishchenko, S., Volchkov, S., Kljashtorny, V., Nikonova, E., Nikonov, O., Nikulin, A., Kohrer, C., Piendl, W., Zimmermann, R., Stockley, P., Garber, M., Nikonov, S.
Deposit date:2005-04-26
Release date:2006-05-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:New insights into the interaction of ribosomal protein L1 with RNA.
J.Mol.Biol., 355, 2006
1U63
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THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX
Descriptor:49 NT FRAGMENT OF MRNA FOR L1, 50S ribosomal protein L1P
Authors:Nevskaya, N., Tishchenko, S., Gabdoulkhakov, A., Nikonova, E., Nikonov, O., Nikulin, A., Garber, M., Nikonov, S., Piendl, W.
Deposit date:2004-07-29
Release date:2005-04-12
Last modified:2016-11-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA.
Nucleic Acids Res., 33, 2005
1MJI
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DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX
Descriptor:5S rRNA fragment, 50S ribosomal protein L5, MAGNESIUM ION, ...
Authors:Perederina, A., Nevskaya, N., Nikonov, O., Nikulin, A., Dumas, P., Yao, M., Tanaka, I., Garber, M., Gongadze, G., Nikonov, S.
Deposit date:2002-08-28
Release date:2003-01-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex
RNA, 8, 2002
6H6K
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THE STRUCTURE OF THE FKR MUTANT OF THE ARCHAEAL TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT IN COMPLEX WITH GDPCP, OBTAINED IN THE ABSENCE OF MAGNESIUM SALTS IN THE CRYSTALLIZATION SOLUTION.
Descriptor:Translation initiation factor 2 subunit gamma, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, SODIUM ION, ...
Authors:Nikonov, O., Kravchenko, O., Nevskaya, N., Stolboushkina, E., Gabdulkhakov, A., Garber, M., Nikonov, S.
Deposit date:2018-07-27
Release date:2019-04-17
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:The third structural switch in the archaeal translation initiation factor 2 (aIF2) molecule and its possible role in the initiation of GTP hydrolysis and the removal of aIF2 from the ribosome.
Acta Crystallogr D Struct Biol, 75, 2019
6I5M
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GAMMA SUBUNIT OF THE TRANSLATION INITIATION FACTOR 2 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH GDP AND FORMATE ION
Descriptor:Translation initiation factor 2 subunit gamma, GUANOSINE-5'-DIPHOSPHATE, FORMIC ACID, ...
Authors:Kravchenko, O., Nikonov, O., Gabdulkhakov, A., Stolboushkina, E., Arkhipova, V., Garber, M., Nikonov, S.
Deposit date:2018-11-13
Release date:2019-01-02
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The third structural switch in the archaeal translation initiation factor 2 (aIF2) molecule and its possible role in the initiation of GTP hydrolysis and the removal of aIF2 from the ribosome.
Acta Crystallogr D Struct Biol, 75, 2019
1AN7
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RIBOSOMAL PROTEIN S8 FROM THERMUS THERMOPHILUS
Descriptor:RIBOSOMAL PROTEIN S8
Authors:Nevskaya, N., Nikonov, S., Al-Karadaghi, S.
Deposit date:1997-06-27
Release date:1998-07-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site.
J.Mol.Biol., 279, 1998
1KUQ
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CRYSTAL STRUCTURE OF T3C MUTANT S15 RIBOSOMAL PROTEIN IN COMPLEX WITH 16S RRNA
Descriptor:16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, SULFATE ION
Authors:Nikulin, A.D., Tishchenko, S., Revtovich, S., Ehresmann, B., Ehresmann, C., Dumas, P., Garber, M., Nikonov, S., Nevskaya, N.
Deposit date:2002-01-22
Release date:2003-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA.
Biochemistry Mosc., 69, 2004
3INZ
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H57T HFQ FROM PSEUDOMONAS AERUGINOSA
Descriptor:Protein hfq, CADMIUM ION, SODIUM ION, ...
Authors:Moskaleva, O., Melnik, B., Gabdulkhakov, A., Garber, M., Nikonov, S., Stolboushkina, E., Nikulin, A.
Deposit date:2009-08-13
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.
Acta Crystallogr.,Sect.F, 66, 2010
1AD2
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RIBOSOMAL PROTEIN L1 MUTANT WITH SERINE 179 REPLACED BY CYSTEINE
Descriptor:RIBOSOMAL PROTEIN L1, SULFATE ION, MERCURY (II) ION, ...
Authors:Unge, J., Al-Karadaghi, S., Liljas, A., Jonsson, B.-H., Eliseikina, I., Ossina, N., Nevskaya, N., Fomenkova, N., Garber, M., Nikonov, S.
Deposit date:1997-02-20
Release date:1997-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A mutant form of the ribosomal protein L1 reveals conformational flexibility.
FEBS Lett., 411, 1997
1AK1
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FERROCHELATASE FROM BACILLUS SUBTILIS
Descriptor:FERROCHELATASE
Authors:Al-Karadaghi, S., Hansson, M., Nikonov, S., Jonsson, B., Hederstedt, L.
Deposit date:1997-05-28
Release date:1997-12-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of ferrochelatase: the terminal enzyme in heme biosynthesis.
Structure, 5, 1997
1BXE
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RIBOSOMAL PROTEIN L22 FROM THERMUS THERMOPHILUS
Descriptor:PROTEIN (RIBOSOMAL PROTEIN L22), CHLORIDE ION
Authors:Unge, J., Aberg, A., Al-Karadaghi, S., Nikulin, A., Nikonov, S., Davydova, N., Nevskaya, N., Garber, M., Liljas, A.
Deposit date:1998-10-02
Release date:1998-10-07
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of ribosomal protein L22 from Thermus thermophilus: insights into the mechanism of erythromycin resistance.
Structure, 6, 1998
1BXY
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CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L30 FROM THERMUS THERMOPHILUS AT 1.9 A RESOLUTION: CONFORMATIONAL FLEXIBILITY OF THE MOLECULE.
Descriptor:PROTEIN (RIBOSOMAL PROTEIN L30)
Authors:Fedorov, R., Nevskaya, N., Khairullina, A., Tishchenko, S., Mikhailov, A., Garber, M., Nikonov, S.
Deposit date:1998-10-09
Release date:1998-10-14
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of ribosomal protein L30 from Thermus thermophilus at 1.9 A resolution: conformational flexibility of the molecule.
Acta Crystallogr.,Sect.D, 55, 1999
1CJS
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CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII
Descriptor:50S RIBOSOMAL PROTEIN L1P
Authors:Nevskaya, N., Tishchenko, S., Fedorov, R., Al-Karadaghi, S., Liljas, A., Kraft, A., Piendl, W., Garber, M., Nikonov, S.
Deposit date:1999-04-19
Release date:2000-05-31
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Archaeal ribosomal protein L1: the structure provides new insights into RNA binding of the L1 protein family.
Structure Fold.Des., 8, 2000
1F7Y
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THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY
Descriptor:16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, ...
Authors:Ennifar, E., Nikouline, A., Serganov, A., Tishchenko, S., Nevskaya, N., Garber, M., Ehresmann, B., Ehresmann, C., Nikonov, S., Dumas, P.
Deposit date:2000-06-28
Release date:2000-11-22
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of UUCG tetraloop.
J.Mol.Biol., 304, 2000
1MZP
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STRUCTURE OF THE L1 PROTUBERANCE IN THE RIBOSOME
Descriptor:fragment of 23S rRNA, 50s ribosomal protein L1P, MAGNESIUM ION
Authors:Nikulin, A., Eliseikina, I., Tishchenko, S., Nevskaya, N., Davydova, N., Platonova, O., Piendl, W., Selmer, M., Liljas, A., Zimmermann, R., Garber, M., Nikonov, S.
Deposit date:2002-10-09
Release date:2003-01-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of the L1 protuberance in the ribosome.
Nat.Struct.Biol., 10, 2003
2HW8
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STRUCTURE OF RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 RESOLUTION.
Descriptor:36-MER, 50S ribosomal protein L1, MAGNESIUM ION, ...
Authors:Tishchenko, S., Nikonova, E., Nikulin, A., Nevskaya, N., Volchkov, S., Piendl, W., Garber, M., Nikonov, S.
Deposit date:2006-08-01
Release date:2006-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the ribosomal protein L1-mRNA complex at 2.1 A resolution: common features of crystal packing of L1-RNA complexes.
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2OUM
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THE FIRST DOMAIN OF L1 FROM THERMUS THERMOPHILUS
Descriptor:50S ribosomal protein L1
Authors:Kljashtorny, V., Tishchenko, S., Nevskaya, N., Nikonov, S., Davydova, N., Garber, M.
Deposit date:2007-02-12
Release date:2008-02-26
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Domain I of ribosomal protein L1 is sufficient for specific RNA binding.
Nucleic Acids Res., 35, 2007
2OV7
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THE FIRST DOMAIN OF THE RIBOSOMAL PROTEIN L1 FROM THERMUS THERMOPHILUS
Descriptor:50S ribosomal protein L1
Authors:Kljashtorny, V., Tishchenko, S., Nevskaya, N., Nikonov, S., Davydova, N., Garber, M.
Deposit date:2007-02-13
Release date:2007-12-25
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Domain I of ribosomal protein L1 is sufficient for specific RNA binding.
Nucleic Acids Res., 35, 2007
2VPL
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THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII
Descriptor:50S RIBOSOMAL PROTEIN L1, FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE, POTASSIUM ION
Authors:Kljashtorny, V., Tishchenko, S., Nevskaya, N., Nikonov, S., Garber, M.
Deposit date:2008-03-01
Release date:2008-09-23
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA.
J. Mol. Biol., 383, 2008
3JSY
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N-TERMINAL FRAGMENT OF RIBOSOMAL PROTEIN L10 FROM METHANOCOCCUS JANNASCHII
Descriptor:Acidic ribosomal protein P0 homolog
Authors:Kravchenko, O., Mitroshin, I., Nikulin, A.D., Piendl, W., Garber, M., Nikonov, S.
Deposit date:2009-09-11
Release date:2010-05-26
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a two-domain N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii reveals a specific piece of the archaeal ribosomal stalk
J.Mol.Biol., 399, 2010
3M4G
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H57A HFQ FROM PSEUDOMONAS AERUGINOSA
Descriptor:Protein hfq, ZINC ION
Authors:Moskaleva, O., Melnik, B., Gabdulkhakov, A., Garber, M., Nikonov, S., Stolboushkina, E., Nikulin, A.
Deposit date:2010-03-11
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.
Acta Crystallogr.,Sect.F, 66, 2010
2PLF
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THE STRUCTURE OF AIF2GAMMA SUBUNIT FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS IN THE NUCLEOTIDE-FREE FORM.
Descriptor:Translation initiation factor 2 gamma subunit
Authors:Nikonov, O.S., Stolboushkina, E.A., Nikulin, A.D., Hasenohrl, D., Blaesi, U., Manstein, D.J., Fedorov, R.V., Garber, M.B., Nikonov, S.V.
Deposit date:2007-04-19
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:New Insights into the Interactions of the Translation Initiation Factor 2 from Archaea with Guanine Nucleotides and Initiator tRNA.
J.Mol.Biol., 373, 2007
2PMD
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THE STRUCTURES OF AIF2GAMMA SUBUNIT FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS IN THE GDP-BOUND FORM.
Descriptor:Translation initiation factor 2 gamma subunit, GUANOSINE-5'-DIPHOSPHATE, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Nikonov, O.S., Stolboushkina, E.A., Nikulin, A.D., Hasenohrl, D., Blaesi, U., Manstein, D.J., Fedorov, R.V., Garber, M.B., Nikonov, S.V.
Deposit date:2007-04-21
Release date:2007-11-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:New Insights into the Interactions of the Translation Initiation Factor 2 from Archaea with Guanine Nucleotides and Initiator tRNA.
J.Mol.Biol., 373, 2007
3CW2
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CRYSTAL STRUCTURE OF THE INTACT ARCHAEAL TRANSLATION INITIATION FACTOR 2 FROM SULFOLOBUS SOLFATARICUS .
Descriptor:Translation initiation factor 2 subunit gamma, Translation initiation factor 2 subunit alpha, Translation initiation factor 2 subunit beta
Authors:Stolboushkina, E.A., Nikonov, S.V., Nikulin, A.D., Blaesi, U., Manstein, D.J., Fedorov, R.V., Garber, M.B., Nikonov, O.S.
Deposit date:2008-04-21
Release date:2009-01-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the intact archaeal translation initiation factor 2 demonstrates very high conformational flexibility in the alpha- and beta-subunits.
J.Mol.Biol., 382, 2008
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