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3ALP
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BU of 3alp by Molmil
Cell adhesion protein
Descriptor: CITRIC ACID, HEXANE-1,6-DIOL, Poliovirus receptor-related protein 1
Authors:Narita, H, Nakagawa, A, Suzuki, M.
Deposit date:2010-08-05
Release date:2011-02-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Crystal Structure of the cis-Dimer of Nectin-1: implications for the architecture of cell-cell junctions
J.Biol.Chem., 286, 2011
7WJT
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BU of 7wjt by Molmil
Crystal structure of coiled-coil region of mouse TMEM266
Descriptor: Isoform 2 of Transmembrane protein 266
Authors:Narita, H, Nishikawa, S, Nakagawa, A.
Deposit date:2022-01-07
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insight into the function of a unique voltage-sensor protein (TMEM266) and its short form in mouse cerebellum.
Biochem.J., 479, 2022
5B22
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BU of 5b22 by Molmil
Dimer structure of murine Nectin-3 D1D2
Descriptor: Nectin-3, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Takebe, K, Sangawa, T, Katsutani, T, Narita, H, Suzuki, M.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Dimer structure of murine Nectin-3 D1D2
To Be Published
1DHY
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BU of 1dhy by Molmil
KKS102 BPHC ENZYME
Descriptor: 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T, Sugiyama, K, Narita, H, Mitsui, Y.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
3VQF
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BU of 3vqf by Molmil
Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein
Descriptor: E3 ubiquitin-protein ligase LNX
Authors:Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H.
Deposit date:2012-03-22
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3VQG
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BU of 3vqg by Molmil
Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein
Descriptor: C-terminal peptide from Immunoglobulin superfamily member 5, E3 ubiquitin-protein ligase LNX, SULFATE ION
Authors:Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H.
Deposit date:2012-03-23
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3AXA
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BU of 3axa by Molmil
Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from nectin-3
Descriptor: Afadin, Nectin-3
Authors:Fujiwara, Y, Goda, N, Narita, H, Satomura, K, Nakagawa, A, Sakisaka, T, Suzuki, M, Hiroaki, H.
Deposit date:2011-03-31
Release date:2012-04-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Crystal structure of afadin PDZ domain-nectin-3 complex shows the structural plasticity of the ligand-binding site.
Protein Sci., 24, 2015
1V6Q
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BU of 1v6q by Molmil
Crystal Structures of Collagen Model Peptides with Pro-Hyp-Gly Sequence at 1.3 A
Descriptor: Collagen like peptide
Authors:Okuyama, K, Hongo, C, Fukushima, R, Wu, G, Narita, H, Noguchi, K, Tanaka, Y, Nishino, N.
Deposit date:2003-12-03
Release date:2004-08-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
1V7H
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BU of 1v7h by Molmil
Crystal Structures of Collagen Model Peptides with Pro-Hyp-Gly Sequence at 1.26 A
Descriptor: Collagen like peptide
Authors:Okuyama, K, Hongo, C, Fukushima, R, Wu, G, Narita, H, Noguchi, K, Tanaka, Y, Nishino, N.
Deposit date:2003-12-17
Release date:2004-08-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
3WKV
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BU of 3wkv by Molmil
Voltage-gated proton channel: VSOP/Hv1 chimeric channel
Descriptor: Ion channel
Authors:Takeshita, K, Sakata, S, Yamashita, E, Fujiwara, Y, Kawanabe, A, Kurokawa, T, Okochi, Y, Matsuda, M, Narita, H, Okamura, Y, Nakagawa, A.
Deposit date:2013-10-31
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.453 Å)
Cite:X-ray crystal structure of voltage-gated proton channel.
Nat.Struct.Mol.Biol., 21, 2014
3AV4
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BU of 3av4 by Molmil
Crystal structure of mouse DNA methyltransferase 1
Descriptor: DNA (cytosine-5)-methyltransferase 1, ZINC ION
Authors:Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).
Proc.Natl.Acad.Sci.USA, 108, 2011
3AV5
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BU of 3av5 by Molmil
Crystal structure of mouse DNA methyltransferase 1 with AdoHcy
Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).
Proc.Natl.Acad.Sci.USA, 108, 2011
3AV6
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BU of 3av6 by Molmil
Crystal structure of mouse DNA methyltransferase 1 with AdoMet
Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYLMETHIONINE, ZINC ION
Authors:Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).
Proc.Natl.Acad.Sci.USA, 108, 2011
7DAA
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BU of 7daa by Molmil
Crystal structure of basigin complexed with anti-basigin Fab fragment
Descriptor: CADMIUM ION, Heavy chain of antibody Fab fragment, Isoform 2 of Basigin, ...
Authors:Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S.
Deposit date:2020-10-16
Release date:2021-10-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
7DCE
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BU of 7dce by Molmil
Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Descriptor: 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Heavy chain of Fab fragment, Isoform 2 of Basigin, ...
Authors:Sakuragi, T, Kanai, R, Tsutsumi, A, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Kikkawa, M, Toyoshima, C, Nagata, S.
Deposit date:2020-10-26
Release date:2021-10-20
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
7D9Z
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BU of 7d9z by Molmil
Crystal structure of anti-basigin Fab fragment
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, Heavy chain of antibody Fab fragment, ...
Authors:Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S.
Deposit date:2020-10-14
Release date:2021-10-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.123 Å)
Cite:The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes.
Nat.Struct.Mol.Biol., 28, 2021
2DRX
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BU of 2drx by Molmil
Structure Analysis of (POG)4-(LOG)2-(POG)4
Descriptor: collagen like peptide
Authors:Okuyama, K.
Deposit date:2006-06-16
Release date:2007-04-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Unique side chain conformation of a leu residue in a triple-helical structure
Biopolymers, 86, 2007
2DRT
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BU of 2drt by Molmil
Structure Analysis of (POG)4-LOG-(POG)5
Descriptor: ETHANOL, collagen like peptide
Authors:Okuyama, K.
Deposit date:2006-06-14
Release date:2007-04-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Unique side chain conformation of a leu residue in a triple-helical structure
Biopolymers, 86, 2007
1V4F
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BU of 1v4f by Molmil
Crystal structures of collagen model peptides with pro-hyp-gly sequence at 1.3A
Descriptor: collagen like peptide
Authors:Okuyama, K, Hongo, C, Fukushima, R, Wu, G, Noguchi, K, Tanaka, Y, Nishino, N.
Deposit date:2003-11-13
Release date:2004-08-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
3A08
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BU of 3a08 by Molmil
Structure of (PPG)4-OOG-(PPG)4, monoclinic, twinned crystal
Descriptor: collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Wu, G, Noguchi, K, Mizuno, K, Bachinger, H.P.
Deposit date:2009-03-06
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices.
Acta Crystallogr.,Sect.D, 66, 2010
3A19
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BU of 3a19 by Molmil
Structure of (PPG)4-OOG-(PPG)4_H monoclinic, twinned crystal
Descriptor: collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Hyakutake, M, Wu, G, Mizuno, K, Bachinger, H.P.
Deposit date:2009-03-28
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices.
Acta Crystallogr.,Sect.D, 66, 2010
5X70
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BU of 5x70 by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer
Descriptor: RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3'), mRNA capping enzyme P5
Authors:Nakamichi, Y, Higashiura, A, Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of capping enzyme from Rice dwarf virus
To Be Published
5X6X
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BU of 5x6x by Molmil
Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
Descriptor: 1,2-ETHANEDIOL, mRNA capping enzyme P5
Authors:Nakamichi, Y, Higashiura, A, Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Z
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BU of 5x6z by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, mRNA capping enzyme P5
Authors:Nakamichi, Y, Higashiura, A, Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Y
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BU of 5x6y by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with S-adenosylmethionine
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, S-ADENOSYLMETHIONINE, ...
Authors:Nakamichi, Y, Higashiura, A, Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published

 

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