Author results

3ALP
  • Download 3alp
  • View 3alp
Molmil generated image of 3alp
CELL ADHESION PROTEIN
Descriptor:Poliovirus receptor-related protein 1, CITRIC ACID, HEXANE-1,6-DIOL
Authors:Narita, H., Nakagawa, A., Suzuki, M.
Deposit date:2010-08-05
Release date:2011-02-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Crystal Structure of the cis-Dimer of Nectin-1: implications for the architecture of cell-cell junctions
J.Biol.Chem., 286, 2011
3AXA
  • Download 3axa
  • View 3axa
Molmil generated image of 3axa
CRYSTAL STRUCTURE OF AFADIN PDZ DOMAIN IN COMPLEX WITH THE C-TERMINAL PEPTIDE FROM NECTIN-3
Descriptor:Afadin, Nectin-3
Authors:Fujiwara, Y., Goda, N., Narita, H., Satomura, K., Nakagawa, A., Sakisaka, T., Suzuki, M., Hiroaki, H.
Deposit date:2011-03-31
Release date:2012-04-25
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Crystal structure of afadin PDZ domain-nectin-3 complex shows the structural plasticity of the ligand-binding site.
Protein Sci., 24, 2015
3VQF
  • Download 3vqf
  • View 3vqf
Molmil generated image of 3vqf
CRYSTAL STRUCTURE ANALYSIS OF THE PDZ DOMAIN DERIVED FROM THE TIGHT JUNCTION REGULATING PROTEIN
Descriptor:E3 ubiquitin-protein ligase LNX
Authors:Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
Deposit date:2012-03-22
Release date:2013-03-27
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3VQG
  • Download 3vqg
  • View 3vqg
Molmil generated image of 3vqg
CRYSTAL STRUCTURE ANALYSIS OF THE PDZ DOMAIN DERIVED FROM THE TIGHT JUNCTION REGULATING PROTEIN
Descriptor:E3 ubiquitin-protein ligase LNX, C-terminal peptide from Immunoglobulin superfamily member 5, SULFATE ION
Authors:Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
Deposit date:2012-03-23
Release date:2013-03-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
1DHY
  • Download 1dhy
  • View 1dhy
Molmil generated image of 1dhy
KKS102 BPHC ENZYME
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T., Sugiyama, K., Narita, H., Mitsui, Y.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
1V6Q
  • Download 1v6q
  • View 1v6q
Molmil generated image of 1v6q
CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES WITH PRO-HYP-GLY SEQUENCE AT 1.3 A
Descriptor:Collagen like peptide
Authors:Okuyama, K., Hongo, C., Fukushima, R., Wu, G., Narita, H., Noguchi, K., Tanaka, Y., Nishino, N.
Deposit date:2003-12-03
Release date:2004-08-03
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
1V7H
  • Download 1v7h
  • View 1v7h
Molmil generated image of 1v7h
CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES WITH PRO-HYP-GLY SEQUENCE AT 1.26 A
Descriptor:Collagen like peptide
Authors:Okuyama, K., Hongo, C., Fukushima, R., Wu, G., Narita, H., Noguchi, K., Tanaka, Y., Nishino, N.
Deposit date:2003-12-17
Release date:2004-08-03
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
3AV4
  • Download 3av4
  • View 3av4
Molmil generated image of 3av4
CRYSTAL STRUCTURE OF MOUSE DNA METHYLTRANSFERASE 1
Descriptor:DNA (cytosine-5)-methyltransferase 1, ZINC ION
Authors:Takeshita, K., Suetake, I., Yamashita, E., Suga, M., Narita, H., Nakagawa, A., Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2012-06-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)
Proc.Natl.Acad.Sci.USA, 2011
3AV5
  • Download 3av5
  • View 3av5
Molmil generated image of 3av5
CRYSTAL STRUCTURE OF MOUSE DNA METHYLTRANSFERASE 1 WITH ADOHCY
Descriptor:DNA (cytosine-5)-methyltransferase 1, ZINC ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Takeshita, K., Suetake, I., Yamashita, E., Suga, M., Narita, H., Nakagawa, A., Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)
Proc.Natl.Acad.Sci.USA, 2011
3AV6
  • Download 3av6
  • View 3av6
Molmil generated image of 3av6
CRYSTAL STRUCTURE OF MOUSE DNA METHYLTRANSFERASE 1 WITH ADOMET
Descriptor:DNA (cytosine-5)-methyltransferase 1, ZINC ION, S-ADENOSYLMETHIONINE
Authors:Takeshita, K., Suetake, I., Yamashita, E., Suga, M., Narita, H., Nakagawa, A., Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)
Proc.Natl.Acad.Sci.USA, 2011
3WKV
  • Download 3wkv
  • View 3wkv
Molmil generated image of 3wkv
VOLTAGE-GATED PROTON CHANNEL: VSOP/HV1 CHIMERIC CHANNEL
Descriptor:Ion channel
Authors:Takeshita, K., Sakata, S., Yamashita, E., Fujiwara, Y., Kawanabe, A., Kurokawa, T., Okochi, Y., Matsuda, M., Narita, H., Okamura, Y., Nakagawa, A.
Deposit date:2013-10-31
Release date:2014-03-05
Method:X-RAY DIFFRACTION (3.453 Å)
Cite:X-ray crystal structure of voltage-gated proton channel
Nat.Struct.Mol.Biol., 2014
5B22
  • Download 5b22
  • View 5b22
Molmil generated image of 5b22
DIMER STRUCTURE OF MURINE NECTIN-3 D1D2
Descriptor:Nectin-3, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE
Authors:Takebe, K., Sangawa, T., Katsutani, T., Narita, H., Suzuki, M.
Deposit date:2015-12-28
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Dimer structure of murine Nectin-3 D1D2
To Be Published
1V4F
  • Download 1v4f
  • View 1v4f
Molmil generated image of 1v4f
CRYSTAL STRUCTURES OF COLLAGEN MODEL PEPTIDES WITH PRO-HYP-GLY SEQUENCE AT 1.3A
Descriptor:collagen like peptide
Authors:Okuyama, K., Hongo, C., Fukushima, R., Wu, G., Noguchi, K., Tanaka, Y., Nishino, N.
Deposit date:2003-11-13
Release date:2004-08-03
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers, 76, 2004
2DRT
  • Download 2drt
  • View 2drt
Molmil generated image of 2drt
STRUCTURE ANALYSIS OF (POG)4-LOG-(POG)5
Descriptor:collagen like peptide, ETHANOL
Authors:Okuyama, K.
Deposit date:2006-06-14
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Unique side chain conformation of a leu residue in a triple-helical structure
Biopolymers, 86, 2007
2DRX
  • Download 2drx
  • View 2drx
Molmil generated image of 2drx
STRUCTURE ANALYSIS OF (POG)4-(LOG)2-(POG)4
Descriptor:collagen like peptide
Authors:Okuyama, K.
Deposit date:2006-06-16
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Unique side chain conformation of a leu residue in a triple-helical structure
Biopolymers, 86, 2007
3A08
  • Download 3a08
  • View 3a08
Molmil generated image of 3a08
STRUCTURE OF (PPG)4-OOG-(PPG)4, MONOCLINIC, TWINNED CRYSTAL
Descriptor:collagen-like peptide
Authors:Okuyama, K., Morimoto, T., Wu, G., Noguchi, K., Mizuno, K., Bachinger, H.P.
Deposit date:2009-03-06
Release date:2010-01-12
Last modified:2014-09-17
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices.
Acta Crystallogr.,Sect.D, 66, 2010
3A19
  • Download 3a19
  • View 3a19
Molmil generated image of 3a19
STRUCTURE OF (PPG)4-OOG-(PPG)4_H MONOCLINIC, TWINNED CRYSTAL
Descriptor:collagen-like peptide
Authors:Okuyama, K., Morimoto, T., Hyakutake, M., Wu, G., Mizuno, K., Bachinger, H.P.
Deposit date:2009-03-28
Release date:2010-01-12
Last modified:2014-09-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices.
Acta Crystallogr.,Sect.D, 66, 2010
5X6X
  • Download 5x6x
  • View 5x6x
Molmil generated image of 5x6x
CRYSTAL STRUCTURE OF THE CAPPING ENZYME P5 FROM RICE DWARF VIRUS
Descriptor:mRNA capping enzyme P5, 1,2-ETHANEDIOL
Authors:Nakamichi, Y., Higashiura, A., Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Y
  • Download 5x6y
  • View 5x6y
Molmil generated image of 5x6y
CRYSTAL STRUCTURE OF RICE DWARF VIRUS P5 IN COMPLEX WITH S-ADENOSYLMETHIONINE
Descriptor:mRNA capping enzyme P5, S-ADENOSYLMETHIONINE, 1,2-ETHANEDIOL, ...
Authors:Nakamichi, Y., Higashiura, A., Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Z
  • Download 5x6z
  • View 5x6z
Molmil generated image of 5x6z
CRYSTAL STRUCTURE OF RICE DWARF VIRUS P5 IN COMPLEX WITH GTP AND GDP
Descriptor:mRNA capping enzyme P5, GUANOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE
Authors:Nakamichi, Y., Higashiura, A., Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X70
  • Download 5x70
  • View 5x70
Molmil generated image of 5x70
CRYSTAL STRUCTURE OF RICE DWARF VIRUS P5 IN COMPLEX WITH A SSRNA OLIGOMER
Descriptor:mRNA capping enzyme P5, RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3')
Authors:Nakamichi, Y., Higashiura, A., Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of capping enzyme from Rice dwarf virus
To Be Published
5X71
  • Download 5x71
  • View 5x71
Molmil generated image of 5x71
CRYSTAL STRUCTURE OF RICE DWARF VIRUS P5 IN SPACE GROUP P212121
Descriptor:mRNA capping enzyme P5, GUANOSINE-5'-MONOPHOSPHATE
Authors:Nakamichi, Y., Higashiura, A., Nakagawa, A.
Deposit date:2017-02-23
Release date:2018-02-28
Method:X-RAY DIFFRACTION (2.568 Å)
Cite:Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
1EIL
  • Download 1eil
  • View 1eil
Molmil generated image of 1eil
2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, SULFATE ION, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-26
Release date:2001-02-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1EIR
  • Download 1eir
  • View 1eir
Molmil generated image of 1eir
2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, FE (III) ION, BIPHENYL-2,3-DIOL
Authors:Senda, T.
Deposit date:2000-02-28
Release date:2001-02-28
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001