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3I4I
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BU of 3i4i by Molmil
Crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase) derived from a mouse hindgut metagenome
Descriptor: 1,3-1,4-beta-glucanase, CALCIUM ION
Authors:Nakatani, Y, Nalder, T.D, Tannock, G.W, Cutfield, J.F, Jack, R.W, Carne, A.
Deposit date:2009-07-01
Release date:2010-07-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase) derived from a mouse hindgut metagenome
To be Published
3RRX
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BU of 3rrx by Molmil
Crystal Structure of Q683A mutant of Exo-1,3/1,4-beta-glucanase (ExoP) from Pseudoalteromonas sp. BB1
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Exo-1,3/1,4-beta-glucanase, ...
Authors:Nakatani, Y, Cutfield, S.M, Cutfield, J.F.
Deposit date:2011-05-01
Release date:2011-12-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 279, 2012
4IC3
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BU of 4ic3 by Molmil
Crystal structure of the F495L mutant XIAP RING domain
Descriptor: E3 ubiquitin-protein ligase XIAP, NICKEL (II) ION, ZINC ION
Authors:Nakatani, Y, Day, C.L.
Deposit date:2012-12-09
Release date:2012-12-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase
Biochem.J., 450, 2013
5WED
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BU of 5wed by Molmil
Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.15A resolution
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakatani, Y, Aragao, D, Cook, G.M.
Deposit date:2017-07-09
Release date:2017-10-18
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of type II NADH:quinone oxidoreductase from Caldalkalibacillus thermarum with an improved resolution of 2.15 angstrom.
Acta Crystallogr F Struct Biol Commun, 73, 2017
3F95
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BU of 3f95 by Molmil
Crystal Structure of Extra C-terminal Domain (X) of Exo-1,3/1,4-beta-glucanase (ExoP) from Pseudoalteromonas sp. BB1
Descriptor: Beta-glucosidase, CHLORIDE ION
Authors:Nakatani, Y, Cutfield, S.M, Cutfield, J.F.
Deposit date:2008-11-13
Release date:2009-11-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 2011
4M80
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BU of 4m80 by Molmil
The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida albicans at 1.85A resolution
Descriptor: EXO-1,3-BETA-GLUCANASE
Authors:Nakatani, Y, Cutfield, S.M, Larsen, D.S, Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.858 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
4M81
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BU of 4m81 by Molmil
The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida albicans complexed with 1-fluoro-alpha-D-glucopyranoside (donor) and p-nitrophenyl beta-D-glucopyranoside (acceptor) at 1.86A resolution
Descriptor: 4-nitrophenyl beta-D-glucopyranoside, EXO-1,3-BETA-GLUCANASE, GLYCEROL, ...
Authors:Nakatani, Y, Cutfield, S.M, Larsen, D.S, Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
4M82
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BU of 4m82 by Molmil
The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida albicans complexed with p-nitrophenyl-gentiobioside (product) at 1.6A resolution
Descriptor: 1,2-ETHANEDIOL, 4-nitrophenyl 6-O-beta-D-glucopyranosyl-beta-D-glucopyranoside, EXO-1,3-BETA-GLUCANASE, ...
Authors:Nakatani, Y, Cutfield, S.M, Larsen, D.S, Cutfield, J.F.
Deposit date:2013-08-12
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.592 Å)
Cite:Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase.
Biochemistry, 53, 2014
3UT0
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BU of 3ut0 by Molmil
Crystal structure of exo-1,3/1,4-beta-glucanase (EXOP) from Pseudoalteromonas sp. BB1
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Exo-1,3/1,4-beta-glucanase, ...
Authors:Nakatani, Y, Cutfield, S.M, Cutfield, J.F.
Deposit date:2011-11-24
Release date:2011-12-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 2011
3USZ
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BU of 3usz by Molmil
Crystal structure of truncated exo-1,3/1,4-beta-glucanase (EXOP) from Pseudoalteromonas sp. BB1
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Exo-1,3/1,4-beta-glucanase, ...
Authors:Nakatani, Y, Cutfield, S.M, Cutfield, J.F.
Deposit date:2011-11-24
Release date:2011-12-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and activity of exo-1,3/1,4-beta-glucanase from marine bacterium Pseudoalteromonas sp. BB1 showing a novel C-terminal domain
Febs J., 2011
3N9K
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BU of 3n9k by Molmil
F229A/E292S Double Mutant of Exo-beta-1,3-glucanase from Candida albicans in Complex with Laminaritriose at 1.7 A
Descriptor: CALCIUM ION, Glucan 1,3-beta-glucosidase, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, ...
Authors:Nakatani, Y, Cutfield, S.M, Cutfield, J.F.
Deposit date:2010-05-30
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance
Febs J., 277, 2010
3O6A
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BU of 3o6a by Molmil
F144Y/F258Y Double Mutant of Exo-beta-1,3-glucanase from Candida albicans at 2 A
Descriptor: Glucan 1,3-beta-glucosidase
Authors:Nakatani, Y, Cutfield, S.M, Cutfield, J.F.
Deposit date:2010-07-28
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance
Febs J., 277, 2010
4IC2
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BU of 4ic2 by Molmil
Crystal structure of the XIAP RING domain
Descriptor: E3 ubiquitin-protein ligase XIAP, NICKEL (II) ION, ZINC ION
Authors:Linke, K, Nakatani, Y, Day, C.L.
Deposit date:2012-12-09
Release date:2012-12-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase
Biochem.J., 450, 2013
4NWZ
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BU of 4nwz by Molmil
Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.5A resolution
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakatani, Y, Heikal, A, Lott, J.S, Sazanov, L.A, Baker, E.N, Cook, G.M.
Deposit date:2013-12-07
Release date:2014-02-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation.
Mol.Microbiol., 91, 2014
1BO4
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BU of 1bo4 by Molmil
CRYSTAL STRUCTURE OF A GCN5-RELATED N-ACETYLTRANSFERASE: SERRATIA MARESCENS AMINOGLYCOSIDE 3-N-ACETYLTRANSFERASE
Descriptor: COENZYME A, PROTEIN (SERRATIA MARCESCENS AMINOGLYCOSIDE-3-N-ACETYLTRANSFERASE), SPERMIDINE
Authors:Wolf, E, Vassilev, A, Makino, Y, Sali, A, Nakatani, Y, Burley, S.K.
Deposit date:1998-08-08
Release date:1998-10-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a GCN5-related N-acetyltransferase: Serratia marcescens aminoglycoside 3-N-acetyltransferase.
Cell(Cambridge,Mass.), 94, 1998
4QHR
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BU of 4qhr by Molmil
The structure of alanine racemase from Acinetobacter baumannii
Descriptor: Alanine racemase
Authors:Davis, E, Scaletti-Hutchinson, E, Nakatani, Y, Krause, K.L.
Deposit date:2014-05-29
Release date:2015-05-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of alanine racemase from Acinetobacter baumannii
ACTA CRYSTALLOGR.,SECT.F, 70, 2014
5KMQ
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BU of 5kmq by Molmil
The structure of I379E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5KMR
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BU of 5kmr by Molmil
The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 3.0 angstrom resolution.
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5KMP
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BU of 5kmp by Molmil
The structure of G164E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5KMS
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BU of 5kms by Molmil
The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 2.5 angstrom resolution.
Descriptor: FAD-dependent pyridine nucleotide-disulfide oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Cook, G.M, Aragao, D, Nakatani, Y.
Deposit date:2016-06-27
Release date:2017-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The mechanism of catalysis by type-II NADH:quinone oxidoreductases.
Sci Rep, 7, 2017
5HJ7
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BU of 5hj7 by Molmil
Glutamate Racemase Mycobacterium tuberculosis (MurI) with bound D-glutamate, 2.3 Angstrom resolution, X-ray diffraction
Descriptor: D-GLUTAMIC ACID, Glutamate racemase
Authors:Poen, S, Nakatani, Y, Krause, K.
Deposit date:2016-01-12
Release date:2016-05-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Exploring the structure of glutamate racemase from Mycobacterium tuberculosis as a template for anti-mycobacterial drug discovery.
Biochem. J., 473, 2016
5IJW
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BU of 5ijw by Molmil
Glutamate Racemase (MurI) from Mycobacterium smegmatis with bound D-glutamate, 1.8 Angstrom resolution, X-ray diffraction
Descriptor: D-GLUTAMIC ACID, Glutamate racemase, IODIDE ION
Authors:Poen, S, Nakatani, Y, Krause, K.
Deposit date:2016-03-02
Release date:2016-05-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Exploring the structure of glutamate racemase from Mycobacterium tuberculosis as a template for anti-mycobacterial drug discovery.
Biochem. J., 473, 2016
6Q45
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BU of 6q45 by Molmil
F1-ATPase from Fusobacterium nucleatum
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Petri, J, Nakatani, Y, Montgomery, M.G, Ferguson, S.A, Aragao, D, Leslie, A.G.W, Heikal, A, Walker, J.E, Cook, G.M.
Deposit date:2018-12-05
Release date:2019-07-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure of F1-ATPase from the obligate anaerobe Fusobacterium nucleatum.
Open Biology, 9, 2019
1TAF
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BU of 1taf by Molmil
DROSOPHILA TBP ASSOCIATED FACTORS DTAFII42/DTAFII62 HETEROTETRAMER
Descriptor: TFIID TBP ASSOCIATED FACTOR 42, TFIID TBP ASSOCIATED FACTOR 62, ZINC ION
Authors:Xie, X, Kokubo, T, Cohen, S.L, Mirza, U.A, Hoffmann, A, Chait, B.T, Roeder, R.G, Nakatani, Y, Burley, S.K.
Deposit date:1996-06-01
Release date:1996-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural similarity between TAFs and the heterotetrameric core of the histone octamer.
Nature, 380, 1996
1TBA
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BU of 1tba by Molmil
SOLUTION STRUCTURE OF A TBP-TAFII230 COMPLEX: PROTEIN MIMICRY OF THE MINOR GROOVE SURFACE OF THE TATA BOX UNWOUND BY TBP, NMR, 25 STRUCTURES
Descriptor: TRANSCRIPTION INITIATION FACTOR IID 230K CHAIN, TRANSCRIPTION INITIATION FACTOR TFIID
Authors:Liu, D, Ishima, R, Tong, K.I, Bagby, S, Kokubo, T, Muhandiram, D.R, Kay, L.E, Nakatani, Y, Ikura, M.
Deposit date:1998-08-16
Release date:1999-08-16
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP.
Cell(Cambridge,Mass.), 94, 1998

 

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