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1J3A
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BU of 1j3a by Molmil
Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii
Descriptor: 50S ribosomal protein L13P
Authors:Nakashima, T, Tanaka, M, Kazama, T, Kawamura, S, Kimura, M, Yao, M, Tanaka, I.
Deposit date:2003-01-21
Release date:2003-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
1IQ4
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BU of 1iq4 by Molmil
5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS
Descriptor: 50S RIBOSOMAL PROTEIN L5
Authors:Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I.
Deposit date:2001-06-13
Release date:2001-06-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
2Z41
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BU of 2z41 by Molmil
Crystal Structure Analysis of the Ski2-type RNA helicase
Descriptor: MAGNESIUM ION, putative ski2-type helicase
Authors:Nakashima, T, Zhang, X, Kakuta, Y, Yao, M, Tanaka, I, Kimura, M.
Deposit date:2007-06-12
Release date:2008-04-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3
Protein Sci., 17, 2008
1RL2
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BU of 1rl2 by Molmil
RIBOSOMAL PROTEIN L2 RNA-BINDING DOMAIN FROM BACILLUS STEAROTHERMOPHILUS
Descriptor: PROTEIN (RIBOSOMAL PROTEIN L2)
Authors:Nakagawa, A, Hosaka, H, Nakashima, T, Tanaka, I.
Deposit date:1999-03-25
Release date:1999-04-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The three-dimensional structure of the RNA-binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome.
EMBO J., 18, 1999
2Z7C
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BU of 2z7c by Molmil
Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii
Descriptor: ARGININE, DNA/RNA-binding protein Alba
Authors:Hada, K, Nakashima, T, Osawa, T, Shimada, H, Kakuta, Y, Kimura, M.
Deposit date:2007-08-17
Release date:2008-08-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Biosci.Biotechnol.Biochem., 72, 2008
2CZV
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BU of 2czv by Molmil
Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p
Descriptor: ACETIC ACID, Ribonuclease P protein component 2, Ribonuclease P protein component 3, ...
Authors:Kawano, S, Kakuta, Y, Nakashima, T, Tanaka, I, Kimura, M.
Deposit date:2005-07-19
Release date:2006-06-27
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme
J.Mol.Biol., 357, 2006
3AY8
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BU of 3ay8 by Molmil
Glutathione S-transferase unclassified 2 from Bombyx mori
Descriptor: GLYCEROL, Glutathione S-transferase
Authors:Kakuta, Y, Usuda, K, Nakashima, T, Kimura, M, Aso, Y, Yamamoto, K.
Deposit date:2011-05-02
Release date:2011-09-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori
Biochim.Biophys.Acta, 1810, 2011
3WZ0
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BU of 3wz0 by Molmil
On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis
Descriptor: Ribonuclease P protein component 2, Ribonuclease P protein component 3
Authors:Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M.
Deposit date:2014-09-11
Release date:2015-09-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.
Biosci.Biotechnol.Biochem., 79, 2015
3WYZ
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BU of 3wyz by Molmil
On archaeal homologs of the human RNase P protein Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis
Descriptor: GLYCEROL, Ribonuclease P protein component 3
Authors:Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M.
Deposit date:2014-09-11
Release date:2015-09-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.
Biosci.Biotechnol.Biochem., 79, 2015
1WNU
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BU of 1wnu by Molmil
Structure of Archaeal Trans-Editing Protein AlaX in complex with L-serine
Descriptor: SERINE, ZINC ION, alanyl-tRNA synthetase
Authors:Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I.
Deposit date:2004-08-09
Release date:2005-07-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular basis of alanine discrimination in editing site
Proc.Natl.Acad.Sci.Usa, 102, 2005
1WXO
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BU of 1wxo by Molmil
Structure of Archaeal Trans-Editing Protein AlaX in complex with zinc
Descriptor: ZINC ION, alanyl-tRNA synthetase
Authors:Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I.
Deposit date:2005-01-27
Release date:2005-07-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Molecular basis of alanine discrimination in editing site
Proc.Natl.Acad.Sci.Usa, 102, 2005
1BK7
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BU of 1bk7 by Molmil
RIBONUCLEASE MC1 FROM THE SEEDS OF BITTER GOURD
Descriptor: PROTEIN (RIBONUCLEASE MC1)
Authors:Nakagawa, A, Tanaka, I.
Deposit date:1998-07-15
Release date:1999-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of a ribonuclease from the seeds of bitter gourd (Momordica charantia) at 1.75 A resolution.
Biochim.Biophys.Acta, 1433, 1999
3GP7
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BU of 3gp7 by Molmil
Staphylococcal Enterotoxin B mutant N23YK97SK98S
Descriptor: Enterotoxin type B
Authors:Yanaka, S, Tanaka, Y, Tsumoto, K.
Deposit date:2009-03-23
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Contribution of the flexible loop region to the function of staphylococcal enterotoxin B
Protein Eng.Des.Sel., 23, 2010
5DCV
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BU of 5dcv by Molmil
Crystal structure of PhoRpp38-SL12M complex
Descriptor: 50S ribosomal protein L7Ae, RNA (47-MER)
Authors:Oshima, K, Tanaka, Y, Yao, M.
Deposit date:2015-08-24
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.401 Å)
Cite:Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38
Biochem.Biophys.Res.Commun., 474, 2016
487D
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BU of 487d by Molmil
SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
Descriptor: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L14, ...
Authors:Brimacombe, R, Mueller, F.
Deposit date:2000-02-23
Release date:2000-04-10
Last modified:2023-06-07
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
J.Mol.Biol., 298, 2000
3AML
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BU of 3aml by Molmil
Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, BETA-MERCAPTOETHANOL, ...
Authors:Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
3AMK
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BU of 3amk by Molmil
Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Descriptor: GLYCEROL, Os06g0726400 protein, PHOSPHATE ION
Authors:Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
1J1G
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BU of 1j1g by Molmil
Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1F
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BU of 1j1f by Molmil
Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, RIBONUCLEASE MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1V7O
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BU of 1v7o by Molmil
Alanyl-tRNA synthetase editing domain homologue protein from Pyrococcus horikoshii
Descriptor: alanyl-tRNA synthetase
Authors:Okada, A, Yao, M, Sokabe, M, Tanaka, I.
Deposit date:2003-12-18
Release date:2004-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Molecular basis of alanine discrimination in editing site
Proc.Natl.Acad.Sci.Usa, 102, 2005
5XTM
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BU of 5xtm by Molmil
Crystal structure of PhoRpp38 bound to a K-turn in P12.2 helix
Descriptor: 50S ribosomal protein L7Ae, MAGNESIUM ION, RNA (47-MER)
Authors:Oshima, K, Kimura, M.
Deposit date:2017-06-20
Release date:2018-02-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5Y7M
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BU of 5y7m by Molmil
Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix
Descriptor: 50S ribosomal protein L7Ae, GUANOSINE-5'-TRIPHOSPHATE, RNA (52-MER), ...
Authors:Oshima, K, Kimura, M.
Deposit date:2017-08-01
Release date:2018-02-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.
Acta Crystallogr F Struct Biol Commun, 74, 2018

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