Author results

2Z6C
  • Download 2z6c
  • View 2z6c
Molmil generated image of 2z6c
CRYSTAL STRUCTURE OF LOV1 DOMAIN OF PHOTOTROPIN1 FROM ARABIDOPSIS THALIANA
Descriptor:Phototropin-1, FLAVIN MONONUCLEOTIDE
Authors:Nakasako, M., Matsuoka, D., Tokutomi, S.
Deposit date:2007-07-29
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2
J.Mol.Biol., 381, 2008
2Z6D
  • Download 2z6d
  • View 2z6d
Molmil generated image of 2z6d
CRYSTAL STRUCTURE OF LOV1 DOMAIN OF PHOTOTROPIN2 FROM ARABIDOPSIS THALIANA
Descriptor:Phototropin-2, FLAVIN MONONUCLEOTIDE
Authors:Nakasako, M., Matsuoka, D., Tokutomi, S.
Deposit date:2007-07-29
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2
J.Mol.Biol., 381, 2008
1EUZ
  • Download 1euz
  • View 1euz
Molmil generated image of 1euz
GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGATED STATE
Descriptor:GLUTAMATE DEHYDROGENASE, SULFATE ION
Authors:Nakasako, M.
Deposit date:2000-04-19
Release date:2001-04-25
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Large-scale domain movements and hydration structure changes in the active-site cleft of unligated glutamate dehydrogenase from Thermococcus profundus studied by cryogenic X-ray crystal structure analysis and small-angle X-ray scattering.
Biochemistry, 40, 2001
1DLF
  • Download 1dlf
  • View 1dlf
Molmil generated image of 1dlf
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25
Descriptor:ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S), SULFATE ION
Authors:Nakasako, M., Takahashi, H., Shimada, I., Arata, Y.
Deposit date:1998-07-14
Release date:1999-07-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
1WZ1
  • Download 1wz1
  • View 1wz1
Molmil generated image of 1wz1
CRYSTAL STRUCTURE OF THE FV FRAGMENT COMPLEXED WITH DANSYL-LYSINE
Descriptor:Ig light chain, Ig heavy chain, N~6~-{[5-(DIMETHYLAMINO)-1-NAPHTHYL]SULFONYL}-L-LYSINE
Authors:Nakasako, M., Oka, T., Mashumo, M., Takahashi, H., Shimada, I., Yamaguchi, Y., Kato, K., Arata, Y.
Deposit date:2005-02-21
Release date:2006-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten
J.Mol.Biol., 351, 2005
2DLF
  • Download 2dlf
  • View 2dlf
Molmil generated image of 2dlf
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75
Descriptor:PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)), PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)), SULFATE ION
Authors:Nakasako, M., Takahashi, H., Shimada, I., Arata, Y.
Deposit date:1998-12-17
Release date:1999-12-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
2STD
  • Download 2std
  • View 2std
Molmil generated image of 2std
SCYTALONE DEHYDRATASE COMPLEXED WITH TIGHT-BINDING INHIBITOR CARPROPAMID
Descriptor:SCYTALONE DEHYDRATASE, SULFATE ION, ((1RS,3SR)-2,2-DICHLORO-N-[(R)-1-(4-CHLOROPHENYL)ETHYL]-1-ETHYL-3-METHYLCYCLOPROPANECARBOXAMIDE
Authors:Nakasako, M., Motoyama, T., Kurahashi, Y., Yamaguchi, I.
Deposit date:1997-12-21
Release date:1999-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Cryogenic X-ray crystal structure analysis for the complex of scytalone dehydratase of a rice blast fungus and its tight-binding inhibitor, carpropamid: the structural basis of tight-binding inhibition.
Biochemistry, 37, 1998
3EIS
  • Download 3eis
  • View 3eis
Molmil generated image of 3eis
CRYSTAL STRUCTURE OF ARYLMALONATE DECARBOXYLASE
Descriptor:Arylmalonate decarboxylase, SULFATE ION, GLYCEROL
Authors:Nakasako, M., Obata, R., Miyamoto, K., Ohta, H.
Deposit date:2008-09-17
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis of the Enantioselective Decarboxylation by Arylmalonate Decarboxylase
To be Published
1IDP
  • Download 1idp
  • View 1idp
Molmil generated image of 1idp
CRYSTAL STRUCTURE OF SCYTALONE DEHYDRATASE F162A MUTANT IN THE UNLIGATED STATE
Descriptor:SCYTALONE DEHYDRATASE
Authors:Nakasako, M., Motoyama, T., Yamaguchi, I.
Deposit date:2001-04-04
Release date:2003-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystallization of scytalone dehydratase F162A mutant in the unligated state and a preliminary X-ray diffraction study at 37 K
Acta Crystallogr.,Sect.D, 58, 2002
3DTV
  • Download 3dtv
  • View 3dtv
Molmil generated image of 3dtv
CRYSTAL STRUCTURE OF ARYLMALONATE DECARBOXYLASE
Descriptor:Arylmalonate decarboxylase, SULFATE ION, GLYCEROL, ...
Authors:Nakasako, M., Obata, R., Miyamaoto, K., Ohta, H.
Deposit date:2008-07-16
Release date:2009-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
Biochemistry, 49, 2010
3IXL
  • Download 3ixl
  • View 3ixl
Molmil generated image of 3ixl
CRYSTAL STRUCTURE OF THE GLY74CYS-CYS188SER MUTANT OF ARYLMALONATE DECARBOXYLASE IN THE LIGANDED FORM
Descriptor:Arylmalonate decarboxylase, SULFATE ION, 2-PHENYLACETIC ACID, ...
Authors:Nakasako, M., Obata, R.
Deposit date:2009-09-04
Release date:2010-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
Biochemistry, 49, 2010
3IXM
  • Download 3ixm
  • View 3ixm
Molmil generated image of 3ixm
STRUCTURE OF THE GLY74CYS MUTANT OF ARYLMALONATE DECARBOXYLASE IN THE SULFATE ION ASSOCIATED FORM
Descriptor:Arylmalonate decarboxylase, SULFATE ION
Authors:Nakasako, M., Obata, R.
Deposit date:2009-09-04
Release date:2010-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
Biochemistry, 49, 2010
1WN5
  • Download 1wn5
  • View 1wn5
Molmil generated image of 1wn5
CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) COMPLEXED WITH CACODYLIC ACID
Descriptor:Blasticidin-S deaminase, ZINC ION, CACODYLATE ION
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2004-07-27
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
1WN6
  • Download 1wn6
  • View 1wn6
Molmil generated image of 1wn6
CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) COMPLEXED WITH TETRAHEDRAL INTERMEDIATE OF BLASTICIDIN S
Descriptor:Blasticidin-S deaminase, ZINC ION, 6-(4-AMINO-4-HYDROXY-2-OXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-3-[3-AMINO-5-(N-METHYL-GUANIDINO)-PENT ANOYLAMINO]-3,6-DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID, ...
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2004-07-27
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3G
  • Download 2z3g
  • View 2z3g
Molmil generated image of 2z3g
CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD)
Descriptor:Blasticidin-S deaminase, ZINC ION, TREHALOSE
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3H
  • Download 2z3h
  • View 2z3h
Molmil generated image of 2z3h
CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) COMPLEXED WITH DEAMINOHYDROXY BLASTICIDIN S
Descriptor:Blasticidin-S deaminase, ZINC ION, 1-(4-{[(3R)-3-AMINO-5-{[(Z)-AMINO(IMINO)METHYL](METHYL)AMINO}PENTANOYL]AMINO}-2,3,4-TRIDEOXY-D-ERYTHRO-HEX-2-ENOPYRANURONOSYL)-4-HYDROXYPYRIMIDIN-2(1H)-ONE
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3I
  • Download 2z3i
  • View 2z3i
Molmil generated image of 2z3i
CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) MUTANT E56Q COMPLEXED WITH SUBSTRATE
Descriptor:Blasticidin-S deaminase, BLASTICIDIN S, ZINC ION, ...
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3J
  • Download 2z3j
  • View 2z3j
Molmil generated image of 2z3j
CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) R90K MUTANT
Descriptor:Blasticidin-S deaminase, ZINC ION, CACODYLATE ION, ...
Authors:Teh, A.H., Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2AHJ
  • Download 2ahj
  • View 2ahj
Molmil generated image of 2ahj
NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE
Descriptor:NITRILE HYDRATASE, FE (III) ION, ZINC ION, ...
Authors:Nagashima, S., Nakasako, M., Dohmae, N., Tsujimura, M., Takio, K., Odaka, M., Yohda, M., Kamiya, N., Endo, I.
Deposit date:1997-12-24
Release date:1999-01-27
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms.
Nat.Struct.Biol., 5, 1998
4XD7
  • Download 4xd7
  • View 4xd7
Molmil generated image of 4xd7
STRUCTURE OF THERMOPHILIC F1-ATPASE INHIBITED BY EPSILON SUBUNIT
Descriptor:ATP synthase subunit alpha, ATP synthase subunit beta, ATP synthase gamma chain, ...
Authors:SHIRAKIHARA, Y., SHIRATORI, A., TANIKAWA, H., NAKASAKO, M., YOSHIDA, M., SUZUKI, T.
Deposit date:2014-12-19
Release date:2015-08-26
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure of a thermophilic F1 -ATPase inhibited by an epsilon-subunit: deeper insight into the epsilon-inhibition mechanism.
Febs J., 282, 2015
1BM1
  • Download 1bm1
  • View 1bm1
Molmil generated image of 1bm1
CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE
Descriptor:BACTERIORHODOPSIN, RETINAL, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER
Authors:Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.
Deposit date:1998-07-28
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin.
Acta Crystallogr.,Sect.D, 55, 1999
1IWT
  • Download 1iwt
  • View 1iwt
Molmil generated image of 1iwt
CRYSTAL STRUCTURE ANALYSIS OF HUMAN LYSOZYME AT 113K.
Descriptor:LYSOZYME C, CHLORIDE ION
Authors:Joti, Y., Nakasako, M., Kidera, A., Go, N.
Deposit date:2002-06-03
Release date:2002-09-04
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Nonlinear temperature dependence of the crystal structure of lysozyme: correlation between coordinate shifts and thermal factors.
Acta Crystallogr.,Sect.D, 58, 2002
1IWU
  • Download 1iwu
  • View 1iwu
Molmil generated image of 1iwu
CRYSTAL STRUCTURE ANALYSIS OF HUMAN LYSOZYME AT 127K.
Descriptor:LYSOZYME C, CHLORIDE ION
Authors:Joti, Y., Nakasako, M., Kidera, A., Go, N.
Deposit date:2002-06-03
Release date:2002-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Nonlinear temperature dependence of the crystal structure of lysozyme: correlation between coordinate shifts and thermal factors.
Acta Crystallogr.,Sect.D, 58, 2002
1IWV
  • Download 1iwv
  • View 1iwv
Molmil generated image of 1iwv
CRYSTAL STRUCTURE ANALYSIS OF HUMAN LYSOZYME AT 147K.
Descriptor:LYSOZYME C, CHLORIDE ION
Authors:Joti, Y., Nakasako, M., Kidera, A., Go, N.
Deposit date:2002-06-03
Release date:2002-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Nonlinear temperature dependence of the crystal structure of lysozyme: correlation between coordinate shifts and thermal factors.
Acta Crystallogr.,Sect.D, 58, 2002
1IWW
  • Download 1iww
  • View 1iww
Molmil generated image of 1iww
CRYSTAL STRUCTURE ANALYSIS OF HUMAN LYSOZYME AT 152K.
Descriptor:LYSOZYME C, CHLORIDE ION
Authors:Joti, Y., Nakasako, M., Kidera, A., Go, N.
Deposit date:2002-06-03
Release date:2002-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Nonlinear temperature dependence of the crystal structure of lysozyme: correlation between coordinate shifts and thermal factors.
Acta Crystallogr.,Sect.D, 58, 2002
<123>