Author results

5XEC
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HETERODIMER CONSTRUCTED FROM PA CYT C551-HT CYT C552 AND HT CYT C552-PA CYT C551 CHIMERIC PROTEINS
Descriptor:Cytochrome c-552,Cytochrome c-551, Cytochrome c-551,Cytochrome c-552, HEME C
Authors:Zhang, M., Nakanishi, T., Yamanaka, M., Nagao, S., Yanagisawa, S., Shomura, Y., Shibata, N., Ogura, T., Higuchi, Y., Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
5XED
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HETERODIMER CONSTRUCTED FROM M61A PA CYT C551-HT CYT C552 AND HT CYT C552-PA CYT C551 CHIMERIC PROTEINS
Descriptor:Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C
Authors:Zhang, M., Nakanishi, T., Yamanaka, M., Nagao, S., Yanagisawa, S., Shomura, Y., Shibata, N., Ogura, T., Higuchi, Y., Hirota, S.
Deposit date:2017-04-04
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
5B3L
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C101S MUTANT OF FLAVODOXIN FROM PSEUDOMONAS AERUGINOSA
Descriptor:Uncharacterized protein PA3435, SULFATE ION
Authors:Okada, D., Nakanishi, T., Kitamura, M.
Deposit date:2016-03-04
Release date:2017-03-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:C101S mutant of Flavodoxin from Pseudomonas aeruginosa
To Be Published
5B3K
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C101A MUTANT OF FLAVODOXIN FROM PSEUDOMONAS AERUGINOSA
Descriptor:Uncharacterized protein PA3435, SULFATE ION
Authors:Okada, D., Nakanishi, T., Kitamura, M.
Deposit date:2016-03-03
Release date:2017-03-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:C101A mutant of Flavodoxin from Pseudomonas aeruginosa
To Be Published
5AYU
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CRYSTAL STRUCTURE OF HYHEL-10 FV
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, GLYCEROL
Authors:Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.
Deposit date:2015-09-04
Release date:2016-09-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of HyHEL-10 Fv
To Be Published
4QRY
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THE GROUND STATE AND THE N INTERMEDIATE OF PHARAONIS HALORHODOPSIN IN COMPLEX WITH BROMIDE ION
Descriptor:Halorhodopsin, RETINAL, BROMIDE ION, ...
Authors:Kouyama, T., Kawaguchi, H.
Deposit date:2014-07-02
Release date:2015-06-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures of the L1, L2, N, and O States of pharaonis Halorhodopsin
Biophys.J., 108, 2015
3WQJ
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CRYSTAL STRUCTURE OF ARCHAERHODOPSIN-2 AT 1.8 ANGSTROM RESOLUTION
Descriptor:Archaerhodopsin-2, RETINAL, BACTERIORUBERIN, ...
Authors:Kouyama, T.
Deposit date:2014-01-27
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of archaerhodopsin-2 at 1.8 A resolution
Acta Crystallogr.,Sect.D, 70, 2014
3WJ4
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIBUTYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, tributylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIPHENYLTIN
Descriptor:Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
Authors:Harada, S., Hiromori, Y., Fukakusa, S., Kawahara, K., Nakamura, S., Noda, M., Uchiyama, S., Fukui, K., Nishikawa, J., Nagase, H., Kobayashi, Y., Ohkubo, T., Yoshida, T., Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3VYA
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W32Y MUTANT OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:FMN-binding protein, FLAVIN MONONUCLEOTIDE
Authors:Takagi, R., Nakanishi, T., Kitamura, M.
Deposit date:2012-09-22
Release date:2013-09-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of W32Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3VY2
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N33D MUTANT OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:FMN-binding protein, FLAVIN MONONUCLEOTIDE
Authors:Takagi, R., Nakanishi, T., Kitamura, M.
Deposit date:2012-09-21
Release date:2013-09-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3VY5
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N33Q MUTANT OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:FMN-binding protein, FLAVIN MONONUCLEOTIDE, CHLORIDE ION
Authors:Takagi, R., Nakanishi, T., Kitamura, M.
Deposit date:2012-09-21
Release date:2013-09-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of N33Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3VVK
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AN M-LIKE REACTION STATE OF THE AZIDE-BOUND PURPLE FORM OF PHARAONIS HALORHODOPSIN
Descriptor:Halorhodopsin, RETINAL, B-NONYLGLUCOSIDE, ...
Authors:Kouyama, T., Nakanishi, T.
Deposit date:2012-07-26
Release date:2013-06-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Large deformation of helix F during the photoreaction cycle of Pharaonis halorhodopsin in complex with azide
Biophys.J., 104, 2013
3AWH
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E13K MUTANT OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:FMN-binding protein, FLAVIN MONONUCLEOTIDE, CHLORIDE ION
Authors:Sato, S., Nakanishi, T., Inoue, H., Kitamura, M.
Deposit date:2011-03-22
Release date:2012-04-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of E13K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3AMF
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E13R MUTANT OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:FMN-binding protein, FLAVIN MONONUCLEOTIDE, CHLORIDE ION
Authors:Sato, S., Nakanishi, T., Inoue, H., Kitamura, M.
Deposit date:2010-08-19
Release date:2011-10-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of E13R mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3A6Q
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E13T MUTANT OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:FMN-binding protein, FLAVIN MONONUCLEOTIDE, CHLORIDE ION
Authors:Nakanishi, T., Haruyama, Y., Inoue, H., Kitamura, M.
Deposit date:2009-09-08
Release date:2010-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein.
J.Phys.Chem.B, 114, 2010
3A6R
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E13Q MUTANT OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor:FMN-binding protein, FLAVIN MONONUCLEOTIDE, CHLORIDE ION
Authors:Nakanishi, T., Haruyama, Y., Inoue, H., Kitamura, M.
Deposit date:2009-09-08
Release date:2010-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein.
J.Phys.Chem.B, 114, 2010
3A6B
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LN32D COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor:Lysozyme binding ig kappa chain V23-J2 region, IG VH, anti-lysozyme, ...
Authors:Yokota, A., Tsumoto, K., Shiroishi, M., Nakanishi, T., Kondo, H., Kumagai, I.
Deposit date:2009-08-28
Release date:2009-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
3A6C
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LN92D COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor:Lysozyme binding ig kappa chain V23-J2 region, IG VH, anti-lysozyme, ...
Authors:Yokota, A., Tsumoto, K., Shiroishi, M., Nakanishi, T., Kondo, H., Kumagai, I.
Deposit date:2009-08-28
Release date:2009-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
3A67
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT LN31D COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor:Lysozyme binding ig kappa chain V23-J2 region, IG VH, anti-lysozyme, ...
Authors:Yokota, A., Tsumoto, K., Shiroishi, M., Nakanishi, T., Kondo, H., Kumagai, I.
Deposit date:2009-08-24
Release date:2009-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
2RQG
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STRUCTURE OF GSPT1/ERF3A-PABC
Descriptor:G1 to S phase transition 1, Polyadenylate-binding protein 1
Authors:Osawa, M., Nakanishi, T., Hosoda, N., Uchida, S., Hoshino, T., Katada, I., Shimada, I.
Deposit date:2009-05-08
Release date:2010-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs
To be Published
2RQH
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STRUCTURE OF GSPT1/ERF3A-PABC
Descriptor:G1 to S phase transition 1, Polyadenylate-binding protein 1
Authors:Osawa, M., Nakanishi, T., Hosoda, N., Uchida, S., Hoshino, T., Katada, I., Shimada, I.
Deposit date:2009-05-08
Release date:2010-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs
To be Published
2Z4Q
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CRYSTAL STRUCTURE OF A MURINE ANTIBODY FAB 528
Descriptor:anti egfr antibody fab, light chain, heavy chain, ...
Authors:Nakanishi, T., Tsumoto, K., Asano, R., Kondo, H., Kumagai, I.
Deposit date:2007-06-22
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
2YSS
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CRYSTAL STRUCTURE OF HUMANIZED HYHEL-10 FV MUTANT(HQ39KW47Y)-HEN LYSOZYME COMPLEX
Descriptor:ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
Authors:Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.
Deposit date:2007-04-03
Release date:2008-04-08
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
2EKS
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CRYSTAL STRUCTURE OF HUMANIZED HYHEL-10 FV-HEN LYSOZYME COMPLEX
Descriptor:ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
Authors:Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.
Deposit date:2007-03-24
Release date:2008-03-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
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