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4DCN
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BU of 4dcn by Molmil
Crystal Structure Analysis of the Arfaptin2 BAR domain in Complex with ARL1
Descriptor: ADP-ribosylation factor-like protein 1, Arfaptin-2, MAGNESIUM ION, ...
Authors:Nakamura, K, Xie, Y, Kawasaki, M, Kato, R, Wakatsuki, S.
Deposit date:2012-01-18
Release date:2012-06-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural basis for membrane binding specificity of the Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase
J.Biol.Chem., 287, 2012
1WQS
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BU of 1wqs by Molmil
Crystal structure of Norovirus 3C-like protease
Descriptor: 3C-like protease, D(-)-TARTARIC ACID, L(+)-TARTARIC ACID, ...
Authors:Nakamura, K, Someya, Y, Kumasaka, T, Tanaka, N.
Deposit date:2004-10-01
Release date:2005-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A norovirus protease structure provides insights into active and substrate binding site integrity
J.Virol., 79, 2005
7XY8
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BU of 7xy8 by Molmil
Crystal structure of antibody Fab fragment in complex with CD147(EMMPIRIN)
Descriptor: Isoform 2 of Basigin, heavy chain, light chain
Authors:Nakamura, K, Amano, M, Yoneda, K, Suzuki, M, Fukuchi, K.
Deposit date:2022-06-01
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Novel Antibody Exerts Antitumor Effect through Downregulation of CD147 and Activation of Multiple Stress Signals
J Oncol, 2022, 2022
3HSB
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BU of 3hsb by Molmil
Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer
Descriptor: Protein hfq, RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3')
Authors:Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K.
Deposit date:2009-06-10
Release date:2010-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
Nucleic Acids Res., 40, 2012
1EW0
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BU of 1ew0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)
Descriptor: FIXL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
Deposit date:2000-04-21
Release date:2000-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1D06
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BU of 1d06 by Molmil
STRUCTURAL BASIS OF DIMERIZATION AND SENSORY MECHANISMS OF OXYGEN-SENSING DOMAIN OF RHIZOBIUM MELILOTI FIXL DETERMINED AT 1.4A RESOLUTION
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, nitrogen fixation regulatory protein fixL
Authors:Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
Deposit date:1999-09-09
Release date:2000-03-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
2F87
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BU of 2f87 by Molmil
Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus
Descriptor: SRP RNA
Authors:Okada, K, Takahashi, M, Sakamoto, T, Nakamura, K, Kanai, A, Kawai, G
Deposit date:2005-12-02
Release date:2006-08-08
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus
Nucleosides Nucleotides Nucleic Acids, 25, 2006
6IUE
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BU of 6iue by Molmil
DNA helical wire containing Hg(II)
Descriptor: DNA (5'-D(*TP*TP*TP*GP*C)-3'), MERCURY (II) ION
Authors:Ono, A, Kanazawa, H, Ito, H, Goto, M, Nakamura, K, Saneyoshi, H, Kondo, J.
Deposit date:2018-11-28
Release date:2019-10-16
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:A Novel DNA Helical Wire Containing HgII-Mediated T:T and T:G Pairs.
Angew.Chem.Int.Ed.Engl., 58, 2019
1L1W
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BU of 1l1w by Molmil
NMR structure of a SRP19 binding domain in human SRP RNA
Descriptor: SRP19 binding domain of SRP RNA
Authors:Sakamoto, T, Morita, S, Tabata, K, Nakamura, K, Kawai, G.
Deposit date:2002-02-20
Release date:2002-05-22
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of a SRP19 binding domain in human SRP RNA.
J.Biochem.(Tokyo), 132, 2002
7YRU
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BU of 7yru by Molmil
ALK2 antibody complex
Descriptor: Activin receptor type-1, antibody heavy chain, antibody light chain
Authors:Kawaguchi, Y, Nakamura, K, Suzuki, M, Tsuji, S, Katagiri, T.
Deposit date:2022-08-10
Release date:2023-05-17
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A blocking monoclonal antibody reveals dimerization of intracellular domains of ALK2 associated with genetic disorders.
Nat Commun, 14, 2023
3ALR
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BU of 3alr by Molmil
Crystal structure of Nanos
Descriptor: Nanos protein, ZINC ION
Authors:Hashimoto, H, Hara, K, Hishiki, A, Kawaguchi, S, Shichijo, N, Nakamura, K, Unzai, S, Tamaru, Y, Shimizu, T, Sato, M.
Deposit date:2010-08-06
Release date:2011-02-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of zinc-finger domain of Nanos and its functional implications
Embo Rep., 11, 2010
3AZV
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BU of 3azv by Molmil
Crystal structure of the receptor binding domain
Descriptor: D/C mosaic neurotoxin, SULFATE ION
Authors:Nuemket, N, Tanaka, Y, Tsukamoto, K, Tsuji, T, Nakamura, K, Kozaki, S, Yao, M, Tanaka, I.
Deposit date:2011-06-02
Release date:2011-12-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and mutational analyses of the receptor binding domain of botulinum D/C mosaic neurotoxin: insight into the ganglioside binding mechanism
Biochem.Biophys.Res.Commun., 411, 2011
3AZW
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BU of 3azw by Molmil
Crystal structure of the receptor binding domain
Descriptor: D/C mosaic neurotoxin, SULFATE ION
Authors:Nuemket, N, Tanaka, Y, Tsukamoto, K, Tsuji, T, Nakamura, K, Kozaki, S, Yao, M, Tanaka, I.
Deposit date:2011-06-02
Release date:2011-12-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural and mutational analyses of the receptor binding domain of botulinum D/C mosaic neurotoxin: insight into the ganglioside binding mechanism
Biochem.Biophys.Res.Commun., 411, 2011
3AHU
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BU of 3ahu by Molmil
Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
Descriptor: 5'-R(*AP*GP*AP*GP*AP*G)-3', Protein hfq
Authors:Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K.
Deposit date:2010-04-29
Release date:2011-07-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
To be Published
3VW8
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BU of 3vw8 by Molmil
Crystal structure of human c-Met kinase domain with its inhibitor
Descriptor: CHLORIDE ION, Hepatocyte growth factor receptor, N-({4-[(6,7-dimethoxyquinolin-4-yl)oxy]phenyl}carbamothioyl)-2-phenylacetamide
Authors:Matsumoto, S, Miyamoto, N, Hirayama, T, Oki, H, Okada, K, Tawada, M, Iwata, H, Miki, H, Nakamura, K, Hori, A, Imamura, S.
Deposit date:2012-08-08
Release date:2013-08-14
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based design, synthesis, and evaluation of imidazo[1,2-b]pyridazine and imidazo[1,2-a]pyridine derivatives as novel dual c-Met and VEGFR2 kinase inhibitors.
Bioorg.Med.Chem., 21, 2013
5UJJ
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BU of 5ujj by Molmil
Crystal structure of human H130R tryptophanyl-tRNA synthetase in complex with TrpAMP
Descriptor: MAGNESIUM ION, TRYPTOPHANYL-5'AMP, Tryptophan--tRNA ligase, ...
Authors:Xu, X, Yang, X.-L.
Deposit date:2017-01-18
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An alternative conformation of human TrpRS suggests a role of zinc in activating non-enzymatic function.
RNA Biol, 15, 2018
5UJI
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BU of 5uji by Molmil
Crystal structure of human T2-Tryptophanyl-tRNA synthetase with H130R mutation
Descriptor: Tryptophan--tRNA ligase, cytoplasmic
Authors:Xu, X, Yang, X.-L.
Deposit date:2017-01-18
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:An alternative conformation of human TrpRS suggests a role of zinc in activating non-enzymatic function.
RNA Biol, 15, 2018
4F9M
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BU of 4f9m by Molmil
Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator
Descriptor: (9aS)-8-acetyl-N-[(2-ethyl-4-fluoronaphthalen-1-yl)methyl]-1,7-dihydroxy-3-methoxy-9a-methyl-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-carboxamide, Peroxisome proliferator-activated receptor gamma, peptide from Nuclear receptor coactivator 1
Authors:Matsui, Y, Hanzawa, H.
Deposit date:2012-05-19
Release date:2012-08-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Synthesis and biological evaluation of novel (-)-cercosporamide derivatives as potent selective PPARg modulators
Eur.J.Med.Chem., 54, 2012
6IO0
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BU of 6io0 by Molmil
Human IDH1 R132C mutant complexed with compound A.
Descriptor: (2E)-3-{3-[3-(2,6-dichlorophenyl)-5-(propan-2-yl)-1,2-oxazole-4-carbonyl]-1-methyl-1H-indol-7-yl}prop-2-enoic acid, CITRIC ACID, GLYCEROL, ...
Authors:Suzuki, M, Baba, D, Hanzawa, H.
Deposit date:2018-10-29
Release date:2019-10-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Potent Blood-Brain Barrier-Permeable Mutant IDH1 Inhibitor Suppresses the Growth of Glioblastoma with IDH1 Mutation in a Patient-Derived Orthotopic Xenograft Model.
Mol.Cancer Ther., 19, 2020
7CD7
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BU of 7cd7 by Molmil
GFP-40/GFPuv complex, Form I
Descriptor: GFP-40, Green fluorescent protein
Authors:Yasui, N, Yamashita, A.
Deposit date:2020-06-18
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:A sweet protein monellin as a non-antibody scaffold for synthetic binding proteins.
J.Biochem., 169, 2021
4ZTD
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BU of 4ztd by Molmil
Crystal Structure of Human PCNA in complex with a TRAIP peptide
Descriptor: ALA-GLY-ALA-GLY-ALA, ALA-PHE-GLN-ALA-LYS-LEU-ASP-THR-PHE-LEU-TRP-SER, Proliferating cell nuclear antigen
Authors:Montoya, G, Mortuza, G.B, Blanco, F.J, Ibanez de Opakua, A.
Deposit date:2015-05-14
Release date:2015-12-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress.
J.Cell Biol., 212, 2016
4L7F
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BU of 4l7f by Molmil
Co-crystal Structure of JNK1 and AX13587
Descriptor: Mitogen-activated protein kinase 8, N-[1-(4-fluorophenyl)cyclopropyl]-4-[(trans-4-hydroxycyclohexyl)amino]imidazo[1,2-a]quinoxaline-8-carboxamide
Authors:Walter, R.L, Ranieri, G.M, Riggs, A.M, Weissig, H, Li, B, Shreder, K.R.
Deposit date:2013-06-13
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Hit-to-lead optimization and kinase selectivity of imidazo[1,2-a]quinoxalin-4-amine derived JNK1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
1V7A
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BU of 1v7a by Molmil
Crystal structures of adenosine deaminase complexed with potent inhibitors
Descriptor: 1-{(1R,2S)-2-HYDROXY-1-[2-(2-NAPHTHYLOXY)ETHYL]PROPYL}-1H-IMIDAZONE-4-CARBOXAMIDE, ZINC ION, adenosine deaminase
Authors:Kinoshita, T.
Deposit date:2003-12-14
Release date:2004-12-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
1V79
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BU of 1v79 by Molmil
Crystal structures of adenosine deaminase complexed with potent inhibitors
Descriptor: 1-{(1R,2S)-1-[2-(2,3,-DICHLOROPHENYL)ETHYL]-2-HYDROXYPROPYL}-1H-IMIDAZOLE-4-CARBOXAMIDE, Adenosine deaminase, ZINC ION
Authors:Kinoshita, T.
Deposit date:2003-12-14
Release date:2004-12-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
1WXZ
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BU of 1wxz by Molmil
Crystal structure of adenosine deaminase ligated with a potent inhibitor
Descriptor: 1-((1R,2S)-1-{2-[2-(4-CHLOROPHENYL)-1,3-BENZOXAZOL-7-YL]ETHYL}-2-HYDROXYPROPYL)-1H-IMIDAZOLE-4-CARBOXAMIDE, Adenosine deaminase, ZINC ION
Authors:Kinoshita, T.
Deposit date:2005-02-02
Release date:2005-08-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rational design of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors: predicting enzyme conformational change and metabolism
J.Med.Chem., 48, 2005

 

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