Author results

3X2M
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X-RAY STRUCTURE OF PCCEL45A WITH CELLOPENTAOSE AT 0.64 ANGSTROM RESOLUTION.
Descriptor:Endoglucanase V-like protein, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2015-12-30
Method:X-RAY DIFFRACTION (0.64 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
4ZM7
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PCCEL45A N105D MUTATNT AT CRYO CONDITION
Descriptor:Endoglucanase V-like protein
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2015-05-02
Release date:2015-09-02
Method:X-RAY DIFFRACTION (0.701 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
Sci Adv, 1, 2015
3X2L
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X-RAY STRUCTURE OF PCCEL45A APO FORM AT 95K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Nakamura, A., Ishida, T., Ohta, K., Tanaka, H., Inaka, K., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2015-12-30
Method:X-RAY DIFFRACTION (0.83 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2H
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X-RAY STRUCTURE OF PCCEL45A N92D WITH CELLOPENTAOSE AT 95K.
Descriptor:Endoglucanase V-like protein, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2G
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X-RAY STRUCTURE OF PCCEL45A N92D APO FORM AT 100K
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3W9V
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CRYSTAL STRUCTURE OF REFOLDED DING PROTEIN
Descriptor:Phosphate-binding protein, PHOSPHATE ION, GLYCEROL
Authors:Gai, Z.Q., Nakamura, A., Tanaka, Y., Hirano, N., Tanaka, I., Yao, M.
Deposit date:2013-04-17
Release date:2013-10-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.031 Å)
Cite:Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation.
J.SYNCHROTRON RADIAT., 20, 2013
3X2K
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X-RAY STRUCTURE OF PCCEL45A D114N WITH CELLOPENTAOSE AT 95K.
Descriptor:Endoglucanase V-like protein, CELLOPENTAOSE, ALPHA-D-GLUCOSE, ...
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.182 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
5XCY
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STRUCTURE OF THE CELLOBIOHYDROLASE CEL6A FROM PHANEROCHAETE CHRYSOSPORIUM AT 1.2 ANGSTROM
Descriptor:Glucanase
Authors:Tachioka, M., Nakamura, A., Ishida, T., Igarashi, K., Samejima, M.
Deposit date:2017-03-24
Release date:2017-07-26
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Crystal structure of a family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium
Acta Crystallogr F Struct Biol Commun, 73, 2017
3X2N
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PROTON RELAY PATHWAY IN INVERTING CELLULASE
Descriptor:Endoglucanase V-like protein, SULFATE ION
Authors:Nakamura, A., Ishida, T., Fushinobu, S., Igarashi, K., Samejima, M.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
5DNU
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CRYSTAL STRUCTURE OF STRIGA KAI2-LIKE PROTEIN IN COMPLEX WITH KARRIKIN
Descriptor:ShKAI2iB, 3-methyl-2H-furo[2,3-c]pyran-2-one, FORMIC ACID, ...
Authors:Xu, Y., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2015-09-10
Release date:2016-08-17
Last modified:2016-08-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica
Sci Rep, 6, 2016
6A56
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AJLEC FROM THE SEA ANEMONE ANTHOPLEURA JAPONICA
Descriptor:AJLec, BETA-LACTOSE, CALCIUM ION, ...
Authors:Unno, H., Hatakeyama, T.
Deposit date:2018-06-22
Release date:2018-07-25
Last modified:2018-08-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica.
Sci Rep, 8, 2018
3WDQ
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CRYSTAL STRUCTURE OF BETA-MANNANASE FROM A SYMBIOTIC PROTIST OF THE TERMITE RETICULITERMES SPERATUS
Descriptor:Beta-mannanase, N-ACETYL-D-GLUCOSAMINE, SODIUM ION, ...
Authors:Tsukagoshi, H., Ishida, T., Touhara, K.K., Igarashi, K., Samejima, M., Fushinobu, S., Kitamoto, K., Arioka, M.
Deposit date:2013-06-20
Release date:2014-03-05
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural and Biochemical Analyses of Glycoside Hydrolase Family 26 beta-Mannanase from a Symbiotic Protist of the Termite Reticulitermes speratus
J.Biol.Chem., 289, 2014
3X2J
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X-RAY STRUCTURE OF PCCEL45A D114N APO FORM AT 95K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.301 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3W9W
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CRYSTAL STRUCTURE OF DING PROTEIN
Descriptor:DING protein, PHOSPHATE ION, GLYCEROL
Authors:Gai, Z.Q., Nakamura, A., Tanaka, Y., Hirano, N., Tanaka, I., Yao, M.
Deposit date:2013-04-17
Release date:2013-10-30
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation.
J.SYNCHROTRON RADIAT., 20, 2013
3WDR
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CRYSTAL STRUCTURE OF BETA-MANNANASE FROM A SYMBIOTIC PROTIST OF THE TERMITE RETICULITERMES SPERATUS COMPLEXED WITH GLUCO-MANNO-OLIGOSACCHARIDE
Descriptor:Beta-mannanase, BETA-D-GLUCOSE, BETA-D-MANNOSE, ...
Authors:Tsukagoshi, H., Ishida, T., Touhara, K.K., Igarashi, K., Samejima, M., Fushinobu, S., Kitamoto, K., Arioka, M.
Deposit date:2013-06-20
Release date:2014-03-05
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and Biochemical Analyses of Glycoside Hydrolase Family 26 beta-Mannanase from a Symbiotic Protist of the Termite Reticulitermes speratus
J.Biol.Chem., 289, 2014
4DWR
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RNA LIGASE RTCB/MN2+ COMPLEX
Descriptor:tRNA-splicing ligase RtcB, SUCROSE, MANGANESE (II) ION, ...
Authors:Xia, S., Englert, M., Soll, D., Wang, J.
Deposit date:2012-02-26
Release date:2012-09-05
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3'-terminal phosphate and 5'-OH.
Proc.Natl.Acad.Sci.USA, 109, 2012
3W0O
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH ADP AND HYGROMYCIN B
Descriptor:Hygromycin-B 4-O-kinase, ADENOSINE-5'-DIPHOSPHATE, HYGROMYCIN B VARIANT
Authors:Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
Deposit date:2012-11-02
Release date:2013-08-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3X2O
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NEUTRON AND X-RAY JOINT REFINED STRUCTURE OF PCCEL45A APO FORM AT 298K.
Descriptor:Endoglucanase V-like protein
Authors:Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Tanaka, I., Niimura, N., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Last modified:2018-05-16
Method:NEUTRON DIFFRACTION (1.5 Å), X-RAY DIFFRACTION
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
3X2P
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NEUTRON AND X-RAY JOINT REFINED STRUCTURE OF PCCEL45A WITH CELLOPENTAOSE AT 298K.
Descriptor:Endoglucanase V-like protein, CELLOPENTAOSE
Authors:Nakamura, A., Ishida, T., Kusaka, K., Yamada, T., Tanaka, I., Niimura, N., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2018-05-16
Method:NEUTRON DIFFRACTION (1.518 Å), X-RAY DIFFRACTION
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
5Y33
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CRYSTAL STRUCTURE OF ALGINATE LYASE FROM FLAVOBACTERIUM SP. UMI-01 REVEALS POLYMANNURONATE SPECIFICITY
Descriptor:Alginate lyase
Authors:Qin, H.-M., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2017-07-27
Release date:2018-07-04
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural basis for controlling the enzymatic properties of polymannuronate preferred alginate lyase FlAlyA from the PL-7 family.
Chem. Commun. (Camb.), 54, 2018
3X2I
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X-RAY STRUCTURE OF PCCEL45A N92D APO FORM AT 298K.
Descriptor:Endoglucanase V-like protein, 3-methylpentane-1,5-diol
Authors:Nakamura, A., Ishida, T., Samejima, M., Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
SCI ADV, 1, 2015
5WUT
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CRYSTAL STRUCTURE OF LAMINARINASE FROM FLAVOBACTERIUM SP. UMI-01
Descriptor:ULam111
Authors:Qin, H.M., Miyakawa, Y., Nakamura, A., Tanokura, M.
Deposit date:2016-12-21
Release date:2018-01-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of laminarinase from Flavobacterium sp. UMI-01
To Be Published
5Z7W
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CRYSTAL STRUCTURE OF STRIGA HERMONTHICA HTL1 (SHHTL1)
Descriptor:Hyposensitive to light 1, MAGNESIUM ION, SODIUM ION, ...
Authors:Xu, Y., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2018-01-30
Release date:2018-08-29
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.657 Å)
Cite:Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
3B0P
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TRNA-DIHYDROURIDINE SYNTHASE FROM THERMUS THERMOPHILUS
Descriptor:tRNA-dihydrouridine synthase, FLAVIN MONONUCLEOTIDE
Authors:Yu, F., Tanaka, Y., Yamashita, K., Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2011-06-12
Release date:2011-12-14
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
5Z7N
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SMCHIA SLIDING-INTERMEDIATE WITH CHITOPENTAOSE
Descriptor:Chitinase A, N-ACETYL-D-GLUCOSAMINE, DI(N-ACETYL-D-GLUCOSAMINE), ...
Authors:Nakamura, A., Iino, R.
Deposit date:2018-01-30
Release date:2018-09-26
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin.
Nat Commun, 9, 2018