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1PAM
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CYCLODEXTRIN GLUCANOTRANSFERASE
Descriptor:CYCLODEXTRIN GLUCANOTRANSFERASE, CALCIUM ION
Authors:Harata, K., Haga, K., Nakamura, A., Aoyagi, M., Yamane, K.
Deposit date:1996-07-08
Release date:1997-01-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray structure of cyclodextrin glucanotransferase from alkalophilic Bacillus sp. 1011. Comparison of two independent molecules at 1.8 A resolution.
Acta Crystallogr.,Sect.D, 52, 1996
1IJ5
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METAL-FREE STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD
Descriptor:PLASMODIAL SPECIFIC LAV1-2 PROTEIN
Authors:Iwasaki, W., Sasaki, H., Nakamura, A., Kohama, K., Tanokura, M.
Deposit date:2001-04-25
Release date:2003-02-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Metal-Free and Ca(2+)-Bound Structures of a Multidomain EF-Hand Protein, CBP40, from the Lower Eukaryote Physarum polycephalum
Structure, 11, 2003
1IJ6
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CA2+-BOUND STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD
Descriptor:PLASMODIAL SPECIFIC LAV1-2 PROTEIN, CALCIUM ION
Authors:Iwasaki, W., Sasaki, H., Nakamura, A., Kohama, K., Tanokura, M.
Deposit date:2001-04-25
Release date:2003-02-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Metal-Free and Ca(2+)-Bound Structures of a Multidomain EF-Hand Protein, CBP40, from the Lower Eukaryote Physarum polycephalum
Structure, 11, 2003
1UKQ
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CRYSTAL STRUCTURE OF CYCLODEXTRIN GLUCANOTRANSFERASE COMPLEXED WITH A PSEUDO-MALTOTETRAOSE DERIVED FROM ACARBOSE
Descriptor:Cyclomaltodextrin glucanotransferase, ALPHA-D-GLUCOSE, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
Authors:Haga, K., Kanai, R., Sakamoto, O., Harata, K., Yamane, K.
Deposit date:2003-09-01
Release date:2004-02-24
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effects of Essential Carbohydrate/Aromatic Stacking Interaction with Tyr100 and Phe259 on Substrate Binding of Cyclodextrin Glycosyltransferase from Alkalophilic Bacillus sp. 1011
J.Biochem.(Tokyo), 134, 2003
1UKS
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CRYSTAL STRUCTURE OF F183L/F259L MUTANT CYCLODEXTRIN GLUCANOTRANSFERASE COMPLEXED WITH A PSEUDO-MALTOTETRAOSE DERIVED FROM ACARBOSE
Descriptor:Cyclomaltodextrin glucanotransferase, ALPHA-D-GLUCOSE, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
Authors:Haga, K., Kanai, R., Sakamoto, O., Harata, K., Yamane, K.
Deposit date:2003-09-01
Release date:2004-02-24
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Effects of Essential Carbohydrate/Aromatic Stacking Interaction with Tyr100 and Phe259 on Substrate Binding of Cyclodextrin Glycosyltransferase from Alkalophilic Bacillus sp. 1011
J.Biochem.(Tokyo), 134, 2003
1UKT
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CRYSTAL STRUCTURE OF Y100L MUTANT CYCLODEXTRIN GLUCANOTRANSFERASE COMPEXED WITH AN ACARBOSE
Descriptor:Cyclomaltodextrin glucanotransferase, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, 4,6-DIDEOXYGLUCOSE, ...
Authors:Haga, K., Kanai, R., Sakamoto, O., Harata, K., Yamane, K.
Deposit date:2003-09-01
Release date:2004-02-24
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Effects of Essential Carbohydrate/Aromatic Stacking Interaction with Tyr100 and Phe259 on Substrate Binding of Cyclodextrin Glycosyltransferase from Alkalophilic Bacillus sp. 1011
J.Biochem.(Tokyo), 134, 2003
1V3J
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CRYSTAL STRUCTURE OF F283L MUTANT CYCLODEXTRIN GLYCOSYLTRANSFERASE
Descriptor:Cyclomaltodextrin glucanotransferase, CALCIUM ION
Authors:Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V3K
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CRYSTAL STRUCTURE OF F283Y MUTANT CYCLODEXTRIN GLYCOSYLTRANSFERASE
Descriptor:Cyclomaltodextrin glucanotransferase, CALCIUM ION
Authors:Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V3L
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CRYSTAL STRUCTURE OF F283L MUTANT CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED WITH A PSEUDO-TETRAOSE DERIVED FROM ACARBOSE
Descriptor:Cyclomaltodextrin glucanotransferase, ALPHA-D-GLUCOSE, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
Authors:Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V3M
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CRYSTAL STRUCTURE OF F283Y MUTANT CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED WITH A PSEUDO-TETRAOSE DERIVED FROM ACARBOSE
Descriptor:Cyclomaltodextrin glucanotransferase, ALPHA-D-GLUCOSE, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
Authors:Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.
Deposit date:2003-11-03
Release date:2004-08-03
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
2F2A
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH GLN
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2005-11-15
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2DB3
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STRUCTURAL BASIS FOR RNA UNWINDING BY THE DEAD-BOX PROTEIN DROSOPHILA VASA
Descriptor:5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ATP-dependent RNA helicase vasa, MAGNESIUM ION, ...
Authors:Sengoku, T., Nureki, O., Nakamura, A., Kobayashi, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-14
Release date:2006-05-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa.
Cell(Cambridge,Mass.), 125, 2006
2DF4
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH MN2+
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-02-23
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2G5H
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-02-23
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2G5I
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH ADP-ALF4
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-02-23
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2DQN
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STRUCTURE OF TRNA-DEPENDENT AMIDOTRANSFERASE GATCAB COMPLEXED WITH ASN
Descriptor:Glutamyl-tRNA(Gln) amidotransferase subunit A, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ...
Authors:Nakamura, A., Yao, M., Tanaka, I.
Deposit date:2006-05-29
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
2DT5
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CRYSTAL STRUCTURE OF TTHA1657 (AT-RICH DNA-BINDING PROTEIN) FROM THERMUS THERMOPHILUS HB8
Descriptor:AT-rich DNA-binding protein, SULFATE ION, CHLORIDE ION, ...
Authors:Nakamura, A., Sosa, A., Komori, H., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-11
Release date:2007-01-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A resolution
Proteins, 66, 2007
2E0I
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CRYSTAL STRUCTURE OF ARCHAEAL PHOTOLYASE FROM SULFOLOBUS TOKODAII WITH TWO FAD MOLECULES: IMPLICATION OF A NOVEL LIGHT-HARVESTING COFACTOR
Descriptor:432aa long hypothetical deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Fujihashi, M., Numoto, N., Kobayashi, Y., Mizushima, A., Tsujimura, M., Nakamura, A., Kawarabayashi, Y., Miki, K.
Deposit date:2006-10-10
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Archaeal Photolyase from Sulfolobus tokodaii with Two FAD Molecules: Implication of a Novel Light-harvesting Cofactor
J.Mol.Biol., 365, 2007
2E1O
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SOLUTION STRUCTURE OF RSGI RUH-028, A HOMEOBOX DOMAIN FROM HUMAN CDNA
Descriptor:Homeobox protein PRH
Authors:Nakamura, A., Ohnishi, S., Abe, T., Nameki, N., Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S., Kawaii, S., Hirota, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-27
Release date:2006-11-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of RSGI RUH-028, a homeobox domain from human cDNA
To be Published
2Z9O
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CRYSTAL STRUCTURE OF THE DIMERIC FORM OF REPE IN COMPLEX WITH THE REPE OPERATOR DNA
Descriptor:DNA (33-MER), Replication initiation protein
Authors:Nakamura, A., Wada, C., Miki, K.
Deposit date:2007-09-21
Release date:2007-11-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structural basis for regulation of bifunctional roles in replication initiator protein
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ZZE
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CRYSTAL STRUCTURE OF ALANYL-TRNA SYNTHETASE WITHOUT OLIGOMERIZATION DOMAIN IN LYSINE-METHYLATED FORM
Descriptor:Alanyl-tRNA synthetase, ZINC ION
Authors:Sokabe, M., Ose, T., Tokunaga, K., Nakamura, A., Nureki, O., Yao, M., Tanaka, I.
Deposit date:2009-02-10
Release date:2009-07-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZZF
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CRYSTAL STRUCTURE OF ALANYL-TRNA SYNTHETASE WITHOUT OLIGOMERIZATION DOMAIN
Descriptor:Alanyl-tRNA synthetase, ZINC ION
Authors:Sokabe, M., Ose, T., Tokunaga, K., Nakamura, A., Nureki, O., Yao, M., Tanaka, I.
Deposit date:2009-02-10
Release date:2009-07-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZZG
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CRYSTAL STRUCTURE OF ALANYL-TRNA SYNTHETASE IN COMPLEX WITH 5''-O-(N-(L-ALANYL)-SULFAMYOXYL) ADENINE WITHOUT OLIGOMERIZATION DOMAIN
Descriptor:Alanyl-tRNA synthetase, ZINC ION, '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE
Authors:Sokabe, M., Ose, T., Tokunaga, K., Nakamura, A., Nureki, O., Yao, M., Tanaka, I.
Deposit date:2009-02-10
Release date:2009-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
3A11
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Translation initiation factor eIF-2B, delta subunit, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, A., Fujihashi, M., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-03-31
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3HR0
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CRYSTAL STRUCTURE OF HOMO SAPIENS CONSERVED OLIGOMERIC GOLGI SUBUNIT 4
Descriptor:CoG4
Authors:Richardson, B.C., Ungar, D., Nakamura, A., Jeffrey, P.D., Hughson, F.M.
Deposit date:2009-06-08
Release date:2009-07-21
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for a human glycosylation disorder caused by mutation of the COG4 gene.
Proc.Natl.Acad.Sci.USA, 106, 2009