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1X2B
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THE CRYSTAL STRUCTURE OF PROLYL AMINOPEPTIDASE COMPLEXED WITH SAR-TBODA
Descriptor:Proline iminopeptidase, 1-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)-2-(METHYLAMINO)ETHANONE
Authors:Nakajima, Y., Ito, K., Sakata, M., Xu, Y., Matsubara, F., Hatakeyama, S., Yoshimoto, T.
Deposit date:2005-04-22
Release date:2006-05-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Unusual extra space at the active site and high activity for acetylated hydroxyproline of prolyl aminopeptidase from Serratia marcescens
J.Bacteriol., 188, 2006
1X2E
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THE CRYSTAL STRUCTURE OF PROLYL AMINOPEPTIDASE COMPLEXED WITH ALA-TBODA
Descriptor:Proline iminopeptidase, (2S)-2-AMINO-1-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)PROPAN-1-ONE
Authors:Nakajima, Y., Ito, K., Sakata, M., Xu, Y., Matsubara, F., Hatakeyama, S., Yoshimoto, T.
Deposit date:2005-04-22
Release date:2006-05-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Unusual extra space at the active site and high activity for acetylated hydroxyproline of prolyl aminopeptidase from Serratia marcescens
J.Bacteriol., 188, 2006
5ZZN
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CRYSTAL STRUCTURE OF PHOTOSYSTEM II FROM AN SQDG-DEFICIENT MUTANT OF THERMOSYNECHOCOCCUS ELONGATUS
Descriptor:Photosystem II protein D1 1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Nakajima, Y., Umena, Y., Nagao, R., Endo, K., Kobayashi, K., Akita, F., Suga, M., Wada, H., Noguchi, T., Shen, J.R.
Deposit date:2018-06-03
Release date:2018-08-01
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II inThermosynechococcus elongatus.
J. Biol. Chem., 293, 2018
1IS2
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CRYSTAL STRUCTURE OF PEROXISOMAL ACYL-COA OXIDASE-II FROM RAT LIVER
Descriptor:acyl-CoA oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakajima, Y., Miyahara, I., Hirotsu, K.
Deposit date:2001-11-07
Release date:2002-04-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of the flavoenzyme acyl-CoA oxidase-II from rat liver, the peroxisomal counterpart of mitochondrial acyl-CoA dehydrogenase.
J.Biochem.(Tokyo), 131, 2002
1V93
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5,10-METHYLENETETRAHYDROFOLATE REDUCTASE FROM THERMUS THERMOPHILUS HB8
Descriptor:5,10-Methylenetetrahydrofolate reductase, FLAVIN-ADENINE DINUCLEOTIDE, 1,4-DIETHYLENE DIOXIDE
Authors:Nakajima, Y., Miyahara, I., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-20
Release date:2004-02-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of 5,10-Methylenetetrahydrofolate reductase from Thermus thermophilus HB8
To be Published
2ECF
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CRYSTAL STRUCTURE OF DIPEPTIDYL AMINOPEPTIDASE IV FROM STENOTROPHOMONAS MALTOPHILIA
Descriptor:Dipeptidyl peptidase IV
Authors:Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-02-13
Release date:2008-02-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Dipeptidyl aminopeptidase IV from Stenotrophomonas maltophilia exhibits activity against a substrate containing a 4-hydroxyproline residue
J.Bacteriol., 190, 2008
2D5L
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CRYSTAL STRUCTURE OF PROLYL TRIPEPTIDYL AMINOPEPTIDASE FROM PORPHYROMONAS GINGIVALIS
Descriptor:dipeptidyl aminopeptidase IV, putative, SULFATE ION
Authors:Nakajima, Y., Ito, K., Xu, Y., Yamada, N., Onohara, Y., Yoshimoto, T.
Deposit date:2005-11-02
Release date:2006-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
J.Mol.Biol., 362, 2006
2DCM
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THE CRYSTAL STRUCTURE OF S603A MUTATED PROLYL TRIPEPTIDYL AMINOPEPTIDASE COMPLEXED WITH SUBSTRATE
Descriptor:dipeptidyl aminopeptidase IV, putative, GLYCYLALANYL-N-2-NAPHTHYL-L-PROLINEAMIDE
Authors:Nakajima, Y., Ito, K., Xu, Y., Yamada, N., Onohara, Y., Yoshimoto, T.
Deposit date:2006-01-09
Release date:2006-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
J.Mol.Biol., 362, 2006
2DQ6
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CRYSTAL STRUCTURE OF AMINOPEPTIDASE N FROM ESCHERICHIA COLI
Descriptor:Aminopeptidase N, ZINC ION, SULFATE ION
Authors:Nakajima, Y., Onohara, Y., Ito, K., Yoshimoto, T.
Deposit date:2006-05-22
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Aminopeptidase N (proteobacteria alanyl aminopeptidase) from Escherichia coli: Crystal structure and conformational change of the methionine 260 residue involved in substrate recognition
J.Biol.Chem., 281, 2006
3A6D
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CREATININASE COMPLEXED WITH 1-METHYLGUANIDINE
Descriptor:Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION, ...
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6E
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W174F MUTANT CREATININASE, TYPE I
Descriptor:Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION, ...
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6F
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W174F MUTANT CREATININASE, TYPE II
Descriptor:Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION, ...
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6G
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W154F MUTANT CREATININASE
Descriptor:Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6H
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W154A MUTANT CREATININASE
Descriptor:Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION, ...
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6J
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E122Q MUTANT CREATININASE COMPLEXED WITH CREATINE
Descriptor:Creatinine amidohydrolase, ZINC ION, N-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE, ...
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-09-02
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6K
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THE E122Q MUTANT CREATININASE, MN-ZN TYPE
Descriptor:Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION, ...
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-09-02
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
3A6L
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E122Q MUTANT CREATININASE, ZN-ZN TYPE
Descriptor:Creatinine amidohydrolase, ZINC ION, CHLORIDE ION
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-09-02
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
2ZXG
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AMINOPEPTIDASE N COMPLEXED WITH THE AMINOPHOSPHINIC INHIBITOR OF PL250, A TRANSITION STATE ANALOGUE
Descriptor:Aminopeptidase N, ZINC ION, N-{(2S)-3-[(1R)-1-aminoethyl](hydroxy)phosphoryl-2-benzylpropanoyl}-L-phenylalanine, ...
Authors:Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2008-12-24
Release date:2009-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of aminopeptidase N from Escherichia coli complexed with the transition-state analogue aminophosphinic inhibitor PL250
Acta Crystallogr.,Sect.D, 65, 2009
1J2T
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CREATININASE MN
Descriptor:creatinine amidohydrolase, ZINC ION, MANGANESE (II) ION, ...
Authors:Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.
Deposit date:2003-01-11
Release date:2004-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1J2U
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CREATININASE ZN
Descriptor:creatinine amidohydrolase, ZINC ION, SULFATE ION
Authors:Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.
Deposit date:2003-01-11
Release date:2004-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1UDY
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MEDIUM-CHAIN ACYL-COA DEHYDROGENASE WITH 3-THIAOCTANOYL-COA
Descriptor:Acyl-CoA dehydrogenase, medium-chain specific, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Satoh, A., Nakajima, Y., Miyahara, I., Hirotsu, K., Tanaka, T., Nishina, Y., Shiga, K., Tamaoki, H., Setoyama, C., Miura, R.
Deposit date:2003-05-07
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the transition state analog of medium-chain acyl-CoA dehydrogenase. Crystallographic and molecular orbital studies on the charge-transfer complex of medium-chain acyl-CoA dehydrogenase with 3-thiaoctanoyl-CoA
J.BIOCHEM.(TOKYO), 134, 2003
1V7Z
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CREATININASE-PRODUCT COMPLEX
Descriptor:creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION, ...
Authors:Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.
Deposit date:2003-12-26
Release date:2004-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
2DQM
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CRYSTAL STRUCTURE OF AMINOPEPTIDASE N COMPLEXED WITH BESTATIN
Descriptor:Aminopeptidase N, ZINC ION, SULFATE ION, ...
Authors:Onohara, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2006-05-29
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Aminopeptidase N (proteobacteria alanyl aminopeptidase) from Escherichia coli: Crystal structure and conformational change of the methionine 260 residue involved in substrate recognition
J.Biol.Chem., 281, 2006
2EEP
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PROLYL TRIPEPTIDYL AMINOPEPTIDASE COMPLEXED WITH AN INHIBITOR
Descriptor:Dipeptidyl aminopeptidase IV, putative, SULFATE ION, ...
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-02-16
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2Z3W
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PROLYL TRIPEPTIDYL AMINOPEPTIDASE MUTANT E636A
Descriptor:Dipeptidyl aminopeptidase IV, SULFATE ION, GLYCEROL
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-06-07
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
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