Author results

1D2M
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UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME
Descriptor:EXCINUCLEASE ABC SUBUNIT B, B-OCTYLGLUCOSIDE, SULFATE ION
Authors:Nakagawa, N., Sugahara, M., Masui, R., Kato, R., Fukuyama, K., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-09-25
Release date:2000-03-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair.
J.Biochem.(Tokyo), 126, 1999
3CM0
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CRYSTAL STRUCTURE OF ADENYLATE KINASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Adenylate kinase
Authors:Nakagawa, N., Kondo, N., Masui, R., Matsuda, Z., Iwamoto, I., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-03-20
Release date:2008-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of adenylate kinase from Thermus thermophilus HB8
To be Published
2YYV
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CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMOTOGA MARITIMA
Descriptor:Probable 2-phosphosulfolactate phosphatase
Authors:Nakagawa, N., Nakamura, Y., Bessho, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-02
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
2YZO
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CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMOTOGA MARITIMA
Descriptor:Probable 2-phosphosulfolactate phosphatase, D-MALATE
Authors:Nakagawa, N., Nakamura, Y., Bessho, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-06
Release date:2007-11-06
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
2Z0J
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CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative uncharacterized protein TTHA1438, CALCIUM ION, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Nakagawa, N., Kukimoto-Niino, M., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
To be Published
2Z0M
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CRYSTAL STRUCTURE OF HYPOTHETICAL ATP-DEPENDENT RNA HELICASE FROM SULFOLOBUS TOKODAII
Descriptor:337aa long hypothetical ATP-dependent RNA helicase deaD
Authors:Nakagawa, N., Kusano, S., Shirouzu, M., Chen, L., Fu, Z.-Q., Chrzas, J., Wang, B.-C., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of hypothetical ATP-dependent RNA helicase from Sulfolobus tokodaii
To be Published
3W8N
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OPEN FORM STRUCTURE OF CMP KINASE IN COMPLEX WITH CMP FROM THERMUS THERMOPHILUS HB8
Descriptor:Cytidylate kinase, CYTIDINE-5'-MONOPHOSPHATE
Authors:Nakagawa, N., Mega, R., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-03-19
Release date:2013-09-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
3W90
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CRYSTAL STRUCTURE OF CMP KINASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Cytidylate kinase
Authors:Nakagawa, N., Mega, R., Masui, R., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-03-22
Release date:2013-09-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
1UM9
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 IN APO-FORM
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, SULFATE ION
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMB
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 IN HOLO-FORM
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMC
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 WITH 4-METHYLPENTANOATE
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMD
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BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 WITH 4-METHYL-2-OXOPENTANOATE AS AN INTERMEDIATE
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1WMW
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CRYSTAL STRUCTURE OF GERANULGERANYL DIPHOSPHATE SYNTHASE FROM THERMUS THERMOPHILUS
Descriptor:geranylgeranyl diphosphate synthetase
Authors:Suto, K., Nishio, K., Nodake, Y., Hamada, K., Kawamoto, M., Nakagawa, N., Kuramitu, S., Miura, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-21
Release date:2005-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of geranulgeranyl diphosphate synthase from Thermus thermophilus
To be Published
1WYT
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CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN APO FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein)
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WYU
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CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN HOLO FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein), PYRIDOXAL-5'-PHOSPHATE
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WYV
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CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN INHIBITOR-BOUND FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein), PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1UFK
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CRYSTAL STRUCTURE OF TT0836
Descriptor:TT0836 protein
Authors:Kaminishi, T., Sakai, H., Takemoto-Hori, C., Terada, T., Nakagawa, N., Maoka, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-31
Release date:2003-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of TT0836
To be Published
1WIY
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CRYSTAL STRUCTURE ANALYSIS OF A 6-COORDINATED CYTOCHOROME P450 FROM THERMUS THERMOPHILUS HB8
Descriptor:Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kousumi, Y., Nakagawa, N., Kaneko, M., Yamamoto, H., Masui, R., Kuramitsu, S., Ueyama, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure Analysis of Cytochrome P450 from Thermus thermophilus HB8
To be Published
2DQB
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CRYSTAL STRUCTURE OF DNTP TRIPHOSPHOHYDROLASE FROM THERMUS THERMOPHILUS HB8, WHICH IS HOMOLOGOUS TO DGTP TRIPHOSPHOHYDROLASE
Descriptor:Deoxyguanosinetriphosphate triphosphohydrolase, putative, MAGNESIUM ION
Authors:Kondo, N., Nakagawa, N., Ebihara, A., Chen, L., Liu, Z.-J., Wang, B.-C., Yokoyama, S., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2ISM
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CRYSTAL STRUCTURE OF THE PUTATIVE OXIDOREDUCTASE (GLUCOSE DEHYDROGENASE) (TTHA0570) FROM THERMUS THEROMOPHILUS HB8
Descriptor:Putative oxidoreductase, CALCIUM ION, CHLORIDE ION
Authors:Jeyakanthan, J., Kanaujia, S.P., Vasuki Ranjani, C., Sekar, K., Ebihara, A., Shinkai, A., Nakagawa, N., Shimizu, N., Yamamoto, M., Kuramitsu, S., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-18
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the Putative Oxidoreductase (Glucose Dehydrogenase) (TTHA0570) from Thermus Theromophilus HB8
To be Published
2ZBP
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CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH S-ADENOSYL-L-METHIONINE
Descriptor:Ribosomal protein L11 methyltransferase, S-ADENOSYLMETHIONINE
Authors:Kaminishi, T., Sakai, H., Takemoto-Hori, C., Terada, T., Nakagawa, N., Maoka, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-26
Release date:2008-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus
To be Published
2ZBQ
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CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE
Descriptor:Ribosomal protein L11 methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kaminishi, T., Sakai, H., Takemoto-Hori, C., Terada, T., Nakagawa, N., Maoka, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-26
Release date:2008-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus
To be Published
2ZBR
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CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH S-ADENOSYL-ORNITHINE
Descriptor:Ribosomal protein L11 methyltransferase, SINEFUNGIN
Authors:Kaminishi, T., Sakai, H., Takemoto-Hori, C., Terada, T., Nakagawa, N., Maoka, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-26
Release date:2008-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus
To be Published
5AWE
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN, TTHA0829 FROM THERMUS THERMOPHILUS HB8, COMPOSED OF CYSTATHIONINE-BETA-SYNTHASE (CBS) AND ASPARTATE-KINASE CHORISMATE-MUTASE TYRA (ACT) DOMAINS
Descriptor:Putative acetoin utilization protein, acetoin dehydrogenase
Authors:Nakabayashi, M., Shibata, N., Kanagawa, M., Nakagawa, N., Kuramitsu, S., Higuchi, Y.
Deposit date:2015-07-03
Release date:2016-05-18
Last modified:2016-09-28
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-beta-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.
Extremophiles, 20, 2016
1UF9
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CRYSTAL STRUCTURE OF TT1252 FROM THERMUS THERMOPHILUS
Descriptor:TT1252 protein, PHOSPHATE ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Seto, A., Murayama, K., Toyama, M., Ebihara, A., Nakagawa, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-28
Release date:2003-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8
PROTEINS, 58, 2005