Author results

3A76
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THE CRYSTAL STRUCTURE OF LINA
Descriptor:Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE, GLYCEROL
Authors:Okai, M., Kubota, K., Fukuda, M., Nagata, Y., Nagata, K., Tanokura, M.
Deposit date:2009-09-15
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26
J.Mol.Biol., 2010
4H77
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, F.L., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7D
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB T81A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7E
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB V112A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7F
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB V134I MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7H
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB T135A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, CHLORIDE ION, CALCIUM ION
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7I
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB L138I MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, CALCIUM ION, CHLORIDE ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7J
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB H247A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7K
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB I253M MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, CHLORIDE ION, CALCIUM ION
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
2D05
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CHITOSANASE FROM BACILLUS CIRCULANS MUTANT K218P
Descriptor:Chitosanase, SULFATE ION
Authors:Fukamizo, T., Amano, S., Yamaguchi, K., Yoshikawa, T., Katsumi, T., Saito, J., Suzuki, M., Miki, K., Nagata, Y., Ando, A.
Deposit date:2005-07-25
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bacillus circulans MH-K1 Chitosanase: Amino Acid Residues Responsible for Substrate Binding
J.Biochem.(Tokyo), 138, 2005
1QGI
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CHITOSANASE FROM BACILLUS CIRCULANS
Descriptor:PROTEIN (CHITOSANASE), D-GLUCOSAMINE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Saito, J., Kita, A., Higuchi, Y., Nagata, Y., Ando, A., Miki, K.
Deposit date:1999-04-28
Release date:1999-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of chitosanase from Bacillus circulans MH-K1 at 1.6-A resolution and its substrate recognition mechanism.
J.Biol.Chem., 274, 1999
1IUB
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FUCOSE-SPECIFIC LECTIN FROM ALEURIA AURANTIA (HG-DERIVATIVE FORM)
Descriptor:Fucose-specific lectin, BETA-L-FUCOSE, SULFATE ION, ...
Authors:Fujihashi, M., Peapus, D.H., Kamiya, N., Nagata, Y., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-01
Release date:2003-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites
Biochemistry, 42, 2003
1IUC
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FUCOSE-SPECIFIC LECTIN FROM ALEURIA AURANTIA WITH THREE LIGANDS
Descriptor:Fucose-specific lectin, BETA-L-FUCOSE, ALPHA-L-FUCOSE, ...
Authors:Fujihashi, M., Peapus, D.H., Kamiya, N., Nagata, Y., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-01
Release date:2003-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites
Biochemistry, 42, 2003
1CV2
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HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 AT 1.6 A RESOLUTION
Descriptor:HALOALKANE DEHALOGENASE
Authors:Marek, J., Vevodova, J., Damborsky, J., Smatanova, I., Svensson, L.A., Newman, J., Nagata, Y., Takagi, M.
Deposit date:1999-08-22
Release date:2000-09-11
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.
Biochemistry, 39, 2000
1D07
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HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 WITH 1,3-PROPANEDIOL, A PRODUCT OF DEBROMIDATION OF DIBROMPROPANE, AT 2.0A RESOLUTION
Descriptor:HALOALKANE DEHALOGENASE, BROMIDE ION, 1,3-PROPANDIOL
Authors:Marek, J., Vevodova, J., Damborsky, J., Smatanova, I., Svensson, L.A., Newman, J., Nagata, Y., Takagi, M.
Deposit date:1999-09-09
Release date:2000-09-11
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.
Biochemistry, 39, 2000
1G42
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STRUCTURE OF 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE (LINB) FROM SPHINGOMONAS PAUCIMOBILIS COMPLEXED WITH 1,2-DICHLOROPROPANE
Descriptor:1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE, ACETATE ION, CALCIUM ION, ...
Authors:Oakley, A.J., Prokop, Z., Bohac, M., Kmunicek, J., Jedlicka, T., Monincova, M., Kuta-Smatanova, I., Nagata, Y., Damborsky, J., Wilce, M.C.J.
Deposit date:2000-10-26
Release date:2001-10-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition.
Biochemistry, 41, 2002
1G4H
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LINB COMPLEXED WITH BUTAN-1-OL
Descriptor:1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE, CALCIUM ION, CHLORIDE ION, ...
Authors:Oakley, A.J., Prokop, Z., Bohac, M., Kmunicek, J., Jedlicka, T., Monincova, M., Kuta-Smatanova, I., Nagata, Y., Damborsky, J., Wilce, M.C.J.
Deposit date:2000-10-27
Release date:2001-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition.
Biochemistry, 41, 2002
1G5F
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STRUCTURE OF LINB COMPLEXED WITH 1,2-DICHLOROETHANE
Descriptor:1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE, CALCIUM ION, CHLORIDE ION, ...
Authors:Oakley, A.J., Prokop, Z., Bohac, M., Kmunicek, J., Jedlicka, T., Monincova, M., Kuta-Smatanova, I., Nagata, Y., Damborsky, J., Wilce, M.C.J.
Deposit date:2000-11-01
Release date:2001-11-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition.
Biochemistry, 41, 2002
2V9Z
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STRUCTURE OF THE RHODOCOCCUS HALOALKANE DEHALOGENASE MUTANT WITH ENHANCED ENANTIOSELECTIVITY
Descriptor:HALOALKANE DEHALOGENASE
Authors:Koudelakova, T., Prokop, Z., Sato, Y., Lapkouski, M., Chovancova, E., Monincova, M., Jesenska, A., Emmer, J., Senda, T., Nagata, Y., Kuta Smatanova, I., Damborsky, J.
Deposit date:2007-08-28
Release date:2008-09-16
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Rational Engineering of Rhodococcus Haloalkane Dehalogenase with Enhanced Enantioselectivity
To be Published
4K2A
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE DBEA FROM BRADYRHIZOBIUM ELKANI USDA94
Descriptor:Haloalkane dehalogenase, CHLORIDE ION, ACETATE ION
Authors:Prudnikova, T., Chaloupkova, R., Rezacova, P., Mozga, T., Koudelakova, T., Sato, Y., Kuty, M., Nagata, Y., Damborsky, J., Kuta Smatanova, I., Structure 2 Function Project (S2F)
Deposit date:2013-04-08
Release date:2014-06-25
Last modified:2014-09-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites.
Acta Crystallogr.,Sect.D, 70, 2014
1K6E
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COMPLEX OF HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 WITH 1,2-PROPANEDIOL (PRODUCT OF DEHALOGENATION OF 1,2-DIBROMOPROPANE) AT 1.85A
Descriptor:HALOALKANE DEHALOGENASE, BROMIDE ION, CHLORIDE ION, ...
Authors:Streltsov, V.A., Prokop, Z., Damborsky, J., Nagata, Y., Oakley, A., Wilce, M.C.J.
Deposit date:2001-10-16
Release date:2003-08-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates.
Biochemistry, 42, 2003
1V4S
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CRYSTAL STRUCTURE OF HUMAN GLUCOKINASE
Descriptor:glucokinase isoform 2, ALPHA-D-GLUCOSE, SODIUM ION, ...
Authors:Kamata, K., Mitsuya, M., Nishimura, T., Eiki, J., Nagata, Y.
Deposit date:2003-11-19
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for allosteric regulation of the monomeric allosteric enzyme human glucokinase
Structure, 12, 2004
1V4T
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CRYSTAL STRUCTURE OF HUMAN GLUCOKINASE
Descriptor:glucokinase isoform 2, SULFATE ION, SODIUM ION
Authors:Kamata, K., Mitsuya, M., Nishimura, T., Eiki, J., Nagata, Y.
Deposit date:2003-11-19
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis for allosteric regulation of the monomeric allosteric enzyme human glucokinase
Structure, 12, 2004
1MJ5
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LINB (HALOALKANE DEHALOGENASE) FROM SPHINGOMONAS PAUCIMOBILIS UT26 AT ATOMIC RESOLUTION
Descriptor:1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase, MAGNESIUM ION, CHLORIDE ION
Authors:Oakley, A.J., Damborsky, J., Wilce, M.C.
Deposit date:2002-08-27
Release date:2003-08-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues.
Biochemistry, 43, 2004
1IZ7
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RE-REFINEMENT OF THE STRUCTURE OF HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 AT 1.6 A RESOLUTION
Descriptor:HALOALKANE DEHALOGENASE, LINB, CHLORIDE ION, ...
Authors:Streltsov, V.A.
Deposit date:2002-09-30
Release date:2002-10-16
Last modified:2017-12-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates
Biochemistry, 42, 2003
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