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1ZOV
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CRYSTAL STRUCTURE OF MONOMERIC SARCOSINE OXIDASE FROM BACILLUS SP. NS-129
Descriptor:Monomeric sarcosine oxidase, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nagata, K., Sasaki, H., Ohtsuka, J., Hua, M., Okai, M., Kubota, K., Kamo, M., Ito, K., Ichikawa, T., Koyama, Y., Tanokura, M.
Deposit date:2005-05-14
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop
PROC.JPN.ACAD.,SER.B, 81, 2005
1EQK
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SOLUTION STRUCTURE OF ORYZACYSTATIN-I, A CYSTEINE PROTEINASE INHIBITOR OF THE RICE, ORYZA SATIVA L. JAPONICA
Descriptor:ORYZACYSTATIN-I
Authors:Nagata, K., Kudo, N., Abe, K., Arai, S., Tanokura, M.
Deposit date:2000-04-05
Release date:2001-01-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of oryzacystatin-I, a cysteine proteinase inhibitor of the rice, Oryza sativa L. japonica.
Biochemistry, 39, 2000
4HE7
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CRYSTAL STRUCTURE OF BRAZZEIN
Descriptor:Defensin-like protein, SODIUM ION
Authors:Nagata, K., Hongo, N., Kameda, Y., Yamamura, A., Sasaki, H., Lee, W.C., Ishikawa, K., Suzuki, E., Tanokura, M.
Deposit date:2012-10-03
Release date:2013-03-27
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana
Acta Crystallogr.,Sect.D, 69, 2013
1BOM
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THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN
Descriptor:BOMBYXIN-II,BOMBYXIN A-2, BOMBYXIN-II,BOMBYXIN A-6
Authors:Nagata, K., Hatanaka, H., Kohda, D., Inagaki, F.
Deposit date:1994-07-21
Release date:1994-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin.
J.Mol.Biol., 253, 1995
1BON
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THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN
Descriptor:BOMBYXIN-II,BOMBYXIN A-2, BOMBYXIN-II,BOMBYXIN A-6
Authors:Nagata, K., Hatanaka, H., Kohda, D., Inagaki, F., Structural Proteomics in Europe (SPINE)
Deposit date:1994-07-21
Release date:1995-01-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin.
J.Mol.Biol., 253, 1995
1HRE
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SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4
Descriptor:HEREGULIN ALPHA
Authors:Nagata, K., Kohda, D., Hatanaka, H., Ichikawa, S., Inagaki, F.
Deposit date:1994-07-21
Release date:1994-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4.
EMBO J., 13, 1994
1HRF
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SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4
Descriptor:HEREGULIN ALPHA
Authors:Nagata, K., Kohda, D., Hatanaka, H., Ichikawa, S., Inagaki, F.
Deposit date:1994-07-21
Release date:1994-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4.
EMBO J., 13, 1994
1V46
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SOLUTION STRUCTURE OF CCAP (CRUSTACEAN CARDIOACTIVE PEPTIDE) FROM DROSOPHILA MELANOGASTER
Descriptor:Cardioactive Peptide
Authors:Nagata, K., Tanokura, M.
Deposit date:2003-11-10
Release date:2004-12-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of CCAP from Drosophila melanogaster
To be Published
1Y49
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SOLUTION STRUCTURE OF CCAP (CRUSTACEAN CARDIOACTIVE PEPTIDE) FROM DROSOPHILA MELANOGASTER
Descriptor:Cardioactive peptide
Authors:Nagata, K., Tanokura, M.
Deposit date:2004-11-30
Release date:2005-11-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster
to be published
2YQY
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CRYSTAL STRUCTURE OF TT2238, A FOUR-HELIX BUNDLE PROTEIN
Descriptor:Hypothetical protein TTHA0303
Authors:Nagata, K., Ohtsuka, J., Iino, H., Ebihara, A., Yokoyama, S., Kuramitsu, S., Tanokura, M.
Deposit date:2007-03-31
Release date:2008-03-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of TTHA0303 (TT2238), a four-helix bundle protein with an exposed histidine triad from Thermus thermophilus HB8 at 2.0 A
Proteins, 70, 2008
3A76
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THE CRYSTAL STRUCTURE OF LINA
Descriptor:Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE, GLYCEROL
Authors:Okai, M., Kubota, K., Fukuda, M., Nagata, Y., Nagata, K., Tanokura, M.
Deposit date:2009-09-15
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26
J.Mol.Biol., 2010
1X0F
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COMPLEX STRUCTURE OF THE C-TERMINAL RNA-BINDING DOMAIN OF HNRNP D(AUF1) WITH TELOMERIC DNA
Descriptor:5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0
Authors:Enokizono, Y., Konishi, Y., Nagata, K., Ouhashi, K., Uesugi, S., Ishikawa, F., Katahira, M.
Deposit date:2005-03-22
Release date:2005-04-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D.
J.Biol.Chem., 280, 2005
4H77
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, F.L., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7D
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB T81A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7E
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB V112A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7F
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB V134I MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7H
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB T135A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, CHLORIDE ION, CALCIUM ION
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7I
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB L138I MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, CALCIUM ION, CHLORIDE ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7J
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB H247A MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, GLYCEROL, CALCIUM ION, ...
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
4H7K
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CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB I253M MUTANT FROM SPHINGOBIUM SP. MI1205
Descriptor:Haloalkane dehalogenase, CHLORIDE ION, CALCIUM ION
Authors:Okai, M., Ohtsuka, J., Imai, L.F., Mase, T., Moriuchi, R., Tsuda, M., Nagata, K., Nagata, Y., Tanokura, M.
Deposit date:2012-09-20
Release date:2013-06-05
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205.
J.Bacteriol., 195, 2013
1WTB
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COMPLEX STRUCTURE OF THE C-TERMINAL RNA-BINDING DOMAIN OF HNRNP D (AUF1) WITH TELOMERE DNA
Descriptor:5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0
Authors:Enokizono, Y., Konishi, Y., Nagata, K., Ouhashi, K., Uesugi, S., Ishikawa, F., Katahira, M.
Deposit date:2004-11-22
Release date:2005-04-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D
J.Biol.Chem., 280, 2005
2EGD
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CRYSTAL STRUCTURE OF HUMAN S100A13 IN THE CA2+-BOUND STATE
Descriptor:Protein S100-A13, CALCIUM ION
Authors:Imai, F.L., Nagata, K., Yonezawa, N., Nakano, M., Tanokura, M.
Deposit date:2007-02-28
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human S100A13 in the Ca2+-bound state
Acta Crystallogr.,Sect.F, 64, 2008
3AI1
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH AND L-SORBOSE REVEALS THE STRUCTURE BASES OF ITS CATALYTIC MECHANISM AND HIGH SUBSTRATE SELECTIVITY
Descriptor:NADPH-sorbose reductase
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-06
Release date:2011-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI2
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH
Descriptor:NADPH-sorbose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-07
Release date:2011-02-09
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI3
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH AND L-SORBOSE
Descriptor:NADPH-sorbose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, L-sorbose, ...
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-07
Release date:2011-02-09
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011