Author results

1BHI
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STRUCTURE OF TRANSACTIVATION DOMAIN OF CRE-BP1/ATF-2, NMR, 20 STRUCTURES
Descriptor:CRE-BP1
Authors:Nagadoi, A., Nakazawa, K., Uda, H., Maekawa, T., Ishii, S., Nishimura, Y.
Deposit date:1998-06-09
Release date:1999-06-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain.
J.Mol.Biol., 287, 1999
1PRU
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1PRV
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1VD4
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SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TFIIE ALPHA
Descriptor:Transcription initiation factor IIE, alpha subunit, ZINC ION
Authors:Okuda, M., Tanaka, A., Arai, Y., Satoh, M., Okamura, H., Nagadoi, A., Hanaoka, F., Ohkuma, Y., Nishimura, Y.
Deposit date:2004-03-18
Release date:2004-10-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.
J.Biol.Chem., 279, 2004
1BA5
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DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES
Descriptor:HTRF1
Authors:Nishikawa, T., Nagadoi, A., Yoshimura, S., Aimoto, S., Nishimura, Y.
Deposit date:1998-04-22
Release date:1999-04-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA-binding domain of human telomeric protein, hTRF1.
Structure, 6, 1998
1ITY
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SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRF1
Descriptor:TRF1
Authors:Nishikawa, T., Okamura, H., Nagadoi, A., Konig, P., Rhodes, D., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-02-15
Release date:2002-03-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a telomeric DNA complex of human TRF1
Structure, 9, 2001
1IV6
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SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF1
Descriptor:5'-D(*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3', 5'-D(*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3', TELOMERIC REPEAT BINDING FACTOR 1
Authors:Nishikawa, T., Okamura, H., Nagadoi, A., Konig, P., Rhodes, D., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-14
Release date:2002-04-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a telomeric DNA complex of human TRF1.
Structure, 9, 2001
1QQI
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SOLUTION STRUCTURE OF THE DNA-BINDING AND TRANSACTIVATION DOMAIN OF PHOB FROM ESCHERICHIA COLI
Descriptor:PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB
Authors:Okamura, H., Hanaoka, S., Nagadoi, A., Makino, K., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-06-07
Release date:2000-06-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box.
J.Mol.Biol., 295, 2000
2RVQ
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SOLUTION STRUCTURE OF THE ISOLATED HISTONE H2A-H2B HETERODIMER
Descriptor:Histone H2A type 1-B/E, Histone H2B type 1-J
Authors:Moriwaki, Y., Yamane, T., Ohtomo, H., Ikeguchi, M., Kurita, J., Sato, M., Nagadoi, A., Shimojo, H., Nishimura, Y.
Deposit date:2016-03-28
Release date:2016-05-25
Method:SOLUTION NMR
Cite:Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
1FEX
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SOLUTION STRUCTURE OF MYB-DOMAIN OF HUMAN RAP1
Descriptor:TRF2-INTERACTING TELOMERIC RAP1 PROTEIN
Authors:Hanaoka, S., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-07-24
Release date:2001-09-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains.
J.Mol.Biol., 312, 2001
1VF9
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SOLUTION STRUCTURE OF HUMAN TRF2
Descriptor:Telomeric repeat binding factor 2
Authors:Nishimura, Y., Hanaoka, S.
Deposit date:2004-04-12
Release date:2005-05-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
1VFC
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SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF2
Descriptor:Short G-rich strand, Short C-rich starnd, Telomeric repeat binding factor 2
Authors:Nishimura, Y., Hanaoka, S.
Deposit date:2004-04-12
Release date:2005-05-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
2N5U
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SOLUTION STRUCTURE OF THE CYANOBACTERIAL CYTOCHROME B6F COMPLEX SUBUNIT PETP
Descriptor:Tsr0524 protein
Authors:Veit, S., Ikegami, T., Roegner, M., Stoll, R.
Deposit date:2015-07-29
Release date:2016-04-13
Last modified:2016-05-18
Method:SOLUTION NMR
Cite:The cyanobacterial cytochrome b6f subunit PetP adopts an SH3 fold in solution
Biochim.Biophys.Acta, 1857, 2016
3X1W
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RAS-RELATED PROTEIN RAP1B WITH GDP
Descriptor:Ras-related protein Rap-1b, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Noguchi, H., Ikegami, T., Akashi, S., Park, S.Y., Tame, J.R.H., Unzai, S.
Deposit date:2014-12-02
Release date:2015-06-03
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015
3X1X
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RAS-RELATED PROTEIN RAP1B WITH GPPNHP
Descriptor:Ras-related protein Rap-1b, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ...
Authors:Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.
Deposit date:2014-12-02
Release date:2015-06-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015
3X1Y
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RAS-RELATED PROTEIN RAP1B(L9V) WITH GPPNHP
Descriptor:Ras-related protein Rap-1b, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ...
Authors:Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.
Deposit date:2014-12-02
Release date:2015-06-03
Method:X-RAY DIFFRACTION (1.168 Å)
Cite:The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015
3X1Z
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RAS-RELATED PROTEIN RAP1B(T65A) WITH GPPNHP
Descriptor:Ras-related protein Rap-1b, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ...
Authors:Noguchi, H., Ikegami, T., Park, S.Y., Tame, J.R.H., Unzai, S.
Deposit date:2014-12-02
Release date:2015-06-03
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The structure and conformational switching of Rap1B
Biochem.Biophys.Res.Commun., 462, 2015