Author results

2VRD
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THE STRUCTURE OF THE ZINC FINGER FROM THE HUMAN SPLICEOSOMAL PROTEIN U1C
Descriptor:U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C, ZINC ION
Authors:Muto, Y., Pomeranz-Krummel, D., Oubridge, C., Hernandez, H., Robinson, C., Neuhaus, D., Nagai, K.
Deposit date:2008-03-31
Release date:2008-04-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The Structure and Biochemical Properties of the Human Spliceosomal Protein U1C
J.Mol.Biol., 341, 2004
1AA9
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HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:C-HA-RAS, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Ito, Y., Yamasaki, Y., Muto, Y., Kawai, G., Nishimura, S., Miyazawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-01-27
Release date:1997-07-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
Biochemistry, 36, 1997
1K2G
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STRUCTURAL BASIS FOR THE 3'-TERMINAL GUANOSINE RECOGNITION BY THE GROUP I INTRON
Descriptor:5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y., Muto, Y., Watanabe, S., Kim, I., Ito, T., Nishiya, Y., Sakamoto, K., Ohtsuki, T., Kawai, G., Watanabe, K., Hosono, K., Takaku, H., Katoh, E., Yamazaki, T., Inoue, T., Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
1UFZ
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SOLUTION STRUCTURE OF HBS1-LIKE DOMAIN IN HYPOTHETICAL PROTEIN BAB28515
Descriptor:Hypothetical protein BAB28515
Authors:He, F., Muto, Y., Hayami, N., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-11
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of HBS1-like domain in hypothetical protein BAB28515
To be Published
1UG0
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SOLUTION STRUCTURE OF SURP DOMAIN IN BAB30904
Descriptor:splicing factor 4
Authors:He, F., Muto, Y., Ushikoshi, R., Koshiba, S., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-11
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of SURP domain in BAB30904
To be Published
1UG1
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SH3 DOMAIN OF HYPOTHETICAL PROTEIN BAA76854.1
Descriptor:KIAA1010 protein
Authors:Nagata, T., Muto, Y., Kamewari, Y., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nakayama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-11
Release date:2003-12-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of SH3 domain of Hypothetical protein BAA76854.1
To be Published
1UG8
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NMR STRUCTURE OF THE R3H DOMAIN FROM POLY(A)-SPECIFIC RIBONUCLEASE
Descriptor:Poly(A)-specific Ribonuclease
Authors:Nagata, T., Muto, Y., Hayami, N., Uda, H., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-15
Release date:2004-08-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the R3H domain from Poly(A)-specific Ribonuclease
To be Published
1UHZ
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SOLUTION STRUCTURE OF DSRNA BINDING DOMAIN IN STAUFEN HOMOLOG 2
Descriptor:staufen (RNA binding protein) homolog 2
Authors:He, F., Muto, Y., Obayashi, N., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Koboyashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-14
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of dsRNA binding domain in Staufen homolog 2
To be Published
1UIL
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DOUBLE-STRANDED RNA-BINDING MOTIF OF HYPOTHETICAL PROTEIN BAB28848
Descriptor:Double-stranded RNA-binding motif
Authors:Nagata, T., Muto, Y., Hayashi, F., Hamana, H., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Hayashizaki, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-17
Release date:2004-11-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of Double-stranded RNA-binding motif of Hypothetical protein BAB28848
To be Published
1B7F
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SXL-LETHAL PROTEIN/RNA COMPLEX
Descriptor:RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3'), PROTEIN (SXL-LETHAL PROTEIN)
Authors:Handa, N., Nureki, O., Kurimoto, K., Kim, I., Sakamoto, H., Shimura, Y., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-01-23
Release date:1999-05-03
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein.
Nature, 398, 1999
1UFW
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SOLUTION STRUCTURE OF RNP DOMAIN IN SYNAPTOJANIN 2
Descriptor:Synaptojanin 2
Authors:He, F., Muto, Y., Ushikoshi, R., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nakayama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-10
Release date:2003-12-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of RNP domain in Synaptojanin 2
To be Published
1UJR
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SOLUTION STRUCTURE OF WWE DOMAIN IN BAB28015
Descriptor:hypothetical protein AK012080
Authors:He, F., Muto, Y., Hamana, H., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nagayama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-08-11
Release date:2004-10-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of WWE domain in BAB28015
To be Published
1UJY
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SOLUTION STRUCTURE OF SH3 DOMAIN IN RAC/CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR(GEF) 6
Descriptor:Rho guanine nucleotide exchange factor 6
Authors:He, F., Muto, Y., Uda, H., Koshiba, S., Shirouzu, M., Terada, T., Kigawa, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Kobayashi, N., Tanaka, A., Osanai, T., Matsuo, Y., Ohara, O., Nagase, T., Kikuno, R., Nagayama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-08-12
Release date:2004-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of SH3 domain in Rac/Cdc42 guanine nucleotide exchange factor(GEF) 6
To be Published
2DZR
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SOLUTION STRUCTURE OF RSGI RUH-067, A GTF2I DOMAIN IN HUMAN CDNA
Descriptor:General transcription factor II-I repeat domain-containing protein 1
Authors:Doi-Katayama, Y., Hirota, H., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-03-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-067, a GTF2I domain in human cDNA
To be published
2RNE
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SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION MOTIF (RRM) OF TIA-1
Descriptor:Tia1 protein
Authors:Takahashi, M., Kuwasako, K., Abe, C., Tsuda, K., Inoue, M., Terada, T., Shirouzu, M., Kobayashi, N., Kigawa, T., Taguchi, S., Guntert, P., Hayashizaki, Y., Tanaka, A., Muto, Y., Yokoyama, S.
Deposit date:2007-12-19
Release date:2008-11-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode
Biochemistry, 47, 2008
2ROK
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SOLUTION STRUCTURE OF THE CAP-BINDING DOMAIN OF PARN COMPLEXED WITH THE CAP ANALOG
Descriptor:poly(A)-specific ribonuclease, 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE
Authors:Nagata, T., Suzuki, S., Endo, R., Shirouzu, M., Terada, T., Inoue, M., Kigawa, T., Guntert, P., Hayashizaki, Y., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-03-28
Release date:2009-02-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition.
Nucleic Acids Res., 36, 2008
2SXL
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SEX-LETHAL RBD1, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:SEX-LETHAL PROTEIN
Authors:Inoue, M., Muto, Y., Sakamoto, H., Kigawa, T., Takio, K., Shimura, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-07-16
Release date:1998-07-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal.
J.Mol.Biol., 272, 1997
2E5S
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SOLUTION STRUCTURE OF THE ZF-CCCHX2 DOMAIN OF MUSCLEBLIND-LIKE 2, ISOFORM 1 [HOMO SAPIENS]
Descriptor:OTTHUMP00000018578, ZINC ION
Authors:Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-22
Release date:2007-06-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the RNA binding domain in the human muscleblind-like protein 2
Protein Sci., 18, 2009
2FYH
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SOLUTION STRUCTURE OF THE 2'-5' RNA LIGASE-LIKE PROTEIN FROM PYROCOCCUS FURIOSUS
Descriptor:putative integral membrane transport protein
Authors:Okada, K., Matsuda, T., Sakamoto, T., Muto, Y., Yokoyama, S., Kanai, A., Kawai, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-08
Release date:2007-02-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
Rna, 15, 2009
2RPP
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SOLUTION STRUCTURE OF TANDEM ZINC FINGER DOMAIN 12 IN MUSCLEBLIND-LIKE PROTEIN 2
Descriptor:Muscleblind-like protein 2, ZINC ION
Authors:Abe, C., Dang, W., Tsuda, K., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-06-24
Release date:2009-05-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the RNA binding domain in the human muscleblind-like protein 2
Protein Sci., 18, 2009
1D8Z
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SOLUTION STRUCTURE OF THE FIRST RNA-BINDING DOMAIN (RBD1) OF HU ANTIGEN C (HUC)
Descriptor:HU ANTIGEN C
Authors:Inoue, M., Muto, Y., Sakamoto, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-26
Release date:2000-04-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR studies on functional structures of the AU-rich element-binding domains of Hu antigen C.
Nucleic Acids Res., 28, 2000
1D9A
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SOLUTION STRUCTURE OF THE SECOND RNA-BINDING DOMAIN (RBD2) OF HU ANTIGEN C (HUC)
Descriptor:HU ANTIGEN C
Authors:Inoue, M., Muto, Y., Sakamoto, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-26
Release date:2000-04-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR studies on functional structures of the AU-rich element-binding domains of Hu antigen C.
Nucleic Acids Res., 28, 2000
1FNX
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SOLUTION STRUCTURE OF THE HUC RBD1-RBD2 COMPLEXED WITH THE AU-RICH ELEMENT
Descriptor:AU-RICH RNA ELEMENT, HU ANTIGEN C
Authors:Inoue, M., Hirao, M., Kasashima, K., Kim, I.-S., Kawai, G., Kigawa, T., Sakamoto, H., Muto, Y., Yokoyama, S.
Deposit date:2000-08-24
Release date:2003-06-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of mouse HuC RNA-binding domains complexed with an AU-Rich element reveals determinants of neuronal differentiation
To be Published, 2000
1HZD
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CRYSTAL STRUCTURE OF HUMAN AUH PROTEIN, AN RNA-BINDING HOMOLOGUE OF ENOYL-COA HYDRATASE
Descriptor:AU-BINDING PROTEIN/ENOYL-COA HYDRATASE
Authors:Kurimoto, K., Fukai, S., Nureki, O., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-01-24
Release date:2001-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase.
Structure, 9, 2001
1U2F
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SOLUTION STRUCTURE OF THE FIRST RNA-BINDING DOMAIN OF HU2AF65
Descriptor:PROTEIN (SPLICING FACTOR U2AF 65 KD SUBUNIT)
Authors:Ito, T., Muto, Y., Green, M.R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-05-26
Release date:1999-08-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of the first and second RNA-binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF(65)).
EMBO J., 18, 1999