Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5C2K
DownloadVisualize
BU of 5c2k by Molmil
Crystal structure of the fusion protein linked by RhoA and the GAP domain of MgcRacGAP
Descriptor: ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Murayama, K, Kato-Murayama, M, Hosaka, T, Kitamura, T, Yokoyama, S, Shirouzu, M.
Deposit date:2015-06-16
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structural basis of G-protein target alternation of MgcRacGAP by phospholylation
To Be Published
5C2J
DownloadVisualize
BU of 5c2j by Molmil
Complex structure of the GAP domain of MgcRacGAP and Cdc42
Descriptor: ALUMINUM FLUORIDE, Cell division control protein 42 homolog, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Murayama, K, Kato-Murayama, M, Hosaka, T, Kitamura, T, Yokoyama, S, Shirouzu, M.
Deposit date:2015-06-16
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of G-protein target alternation of MgcRacGAP by phospholylation
To Be Published
7CD1
DownloadVisualize
BU of 7cd1 by Molmil
Crystal structure of inhibitory Smad, Smad7
Descriptor: CHLORIDE ION, Mothers against decapentaplegic homolog 7, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2020-06-18
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for inhibitory effects of Smad7 on TGF-beta family signaling.
J.Struct.Biol., 212, 2020
7DEX
DownloadVisualize
BU of 7dex by Molmil
Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase H174A mutant with caffeoyl-CoA
Descriptor: Anthocyanin 5-aromatic acyltransferase, S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (E)-3-[3,4-bis(oxidanyl)phenyl]prop-2-enethioate
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2020-11-05
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.
Phytochemistry, 186, 2021
7DEV
DownloadVisualize
BU of 7dev by Molmil
Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora
Descriptor: Anthocyanin 5-aromatic acyltransferase
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2020-11-05
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.
Phytochemistry, 186, 2021
3VTA
DownloadVisualize
BU of 3vta by Molmil
Crystal Structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L
Descriptor: Cucumisin, DIISOPROPYL PHOSPHONATE, alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Murayama, K, Kato-Murayama, M, Hosaka, T, Sotokawauchi, A, Shirouzu, M, Arima, K, Yokoyama, S.
Deposit date:2012-05-23
Release date:2012-08-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L
J.Mol.Biol., 423, 2012
4HYQ
DownloadVisualize
BU of 4hyq by Molmil
Crystal structure of phospholipase A1 from Streptomyces albidoflavus NA297
Descriptor: PENTAETHYLENE GLYCOL, phospholipase A1
Authors:Murayama, K, Sugimori, D.
Deposit date:2012-11-14
Release date:2013-05-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of phospholipase A1 from Streptomyces albidoflavus NA297
J.Struct.Biol., 182, 2013
8I90
DownloadVisualize
BU of 8i90 by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with UDP-glucose
Descriptor: Glycosyltransferase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2023-02-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
8I94
DownloadVisualize
BU of 8i94 by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with luteolin
Descriptor: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, Glycosyltransferase, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2023-02-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
8I8Z
DownloadVisualize
BU of 8i8z by Molmil
Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, apo form
Descriptor: Glycosyltransferase, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2023-02-06
Release date:2024-02-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii.
Arch.Biochem.Biophys., 753, 2024
3WPS
DownloadVisualize
BU of 3wps by Molmil
crystal structure of the GAP domain of MgcRacGAP(S387D)
Descriptor: Rac GTPase-activating protein 1, SULFATE ION
Authors:Murayama, K, Kato-murayama, M, Shirouzu, M, Kitamura, T, Yokoyama, S.
Deposit date:2014-01-15
Release date:2015-01-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:crystal structure of the GAP domain of MgcRacGAP
To be Published
3WPQ
DownloadVisualize
BU of 3wpq by Molmil
crystal structure of the GAP domain of MgcRacGAP(S387A)
Descriptor: Rac GTPase-activating protein 1
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M, Kitamura, T, Yokoyama, S.
Deposit date:2014-01-15
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:crystal structure of the GAP domain of MgcRacGAP
To be Published
1IRQ
DownloadVisualize
BU of 1irq by Molmil
Crystal structure of omega transcriptional repressor at 1.5A resolution
Descriptor: omega transcriptional repressor
Authors:Murayama, K, Orth, P, De La Hoz, A.B, Alonso, J.C, Saenger, W.
Deposit date:2001-10-11
Release date:2001-12-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of omega transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 A resolution.
J.Mol.Biol., 314, 2001
1WDV
DownloadVisualize
BU of 1wdv by Molmil
Crystal structure of hypothetical protein APE2540
Descriptor: hypothetical protein APE2540
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-18
Release date:2004-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
Acta Crystallogr.,Sect.F, 61, 2005
2Z0V
DownloadVisualize
BU of 2z0v by Molmil
Crystal structure of BAR domain of Endophilin-III
Descriptor: SH3-containing GRB2-like protein 3
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of BAR domain of Endophilin-III
To be Published
2Z0O
DownloadVisualize
BU of 2z0o by Molmil
Crystal structure of APPL1-BAR-PH domain
Descriptor: DCC-interacting protein 13-alpha
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of APPL1-BAR-PH domain
To be Published
2Z0K
DownloadVisualize
BU of 2z0k by Molmil
Crystal structure of ProX-AlaSA complex from T. thermophilus
Descriptor: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, Putative uncharacterized protein TTHA1699
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of ProX-AlaSA complex from T. thermophilus
to be published
2Z0X
DownloadVisualize
BU of 2z0x by Molmil
Crystal structure of ProX-CysSA complex from T. thermophilus
Descriptor: 5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE, Putative uncharacterized protein TTHA1699
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of ProX-CysSA complex from T. thermophilus
To be Published
2Z0P
DownloadVisualize
BU of 2z0p by Molmil
Crystal structure of PH domain of Bruton's tyrosine kinase
Descriptor: (2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE, Tyrosine-protein kinase BTK, ZINC ION
Authors:Murayama, K, Kato-Murayama, M, Mishima, C, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of the Bruton's tyrosine kinase PH domain with phosphatidylinositol
Biochem.Biophys.Res.Commun., 377, 2008
2Z0N
DownloadVisualize
BU of 2z0n by Molmil
Crystal structure of APPL1-BAR domain
Descriptor: DCC-interacting protein 13-alpha
Authors:Murayama, K, Kato-Murayama, M, Sakamoto, A, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of APPL1-BAR domain
To be Published
2Z0L
DownloadVisualize
BU of 2z0l by Molmil
Crystal structure of EBV-DNA polymerase accessory protein BMRF1
Descriptor: CHLORIDE ION, Early antigen protein D
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of Epstein-Barr virus DNA polymerase processivity factor BMRF1
J.Biol.Chem., 284, 2009
2Z0U
DownloadVisualize
BU of 2z0u by Molmil
Crystal structure of C2 domain of KIBRA protein
Descriptor: WW domain-containing protein 1
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of C2 domain of KIBRA protein
To be Published
2Z11
DownloadVisualize
BU of 2z11 by Molmil
Crystal structure of putative acetyltransferase
Descriptor: Ribosomal-protein-alanine acetyltransferase
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of putative acetyltransferase
To be Published
2Z0R
DownloadVisualize
BU of 2z0r by Molmil
Crystal structure of hypothetical protein TTHA0547
Descriptor: CHLORIDE ION, Putative uncharacterized protein TTHA0547, SULFATE ION
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hypothetical protein TTHA0547
to be published
2Z0S
DownloadVisualize
BU of 2z0s by Molmil
Crystal structure of putative exosome complex RNA-binding protein
Descriptor: Probable exosome complex RNA-binding protein 1
Authors:Murayama, K, Kato-Murayama, M, Takemoto, C, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of putative exosome complex RNA-binding protein
To be Published

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon