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4WDC
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BU of 4wdc by Molmil
High-resolution crystal structure of water-soluble FraC (mutation F16P)
Descriptor: Fragaceatoxin C
Authors:Caaveiro, J.M.M, Morante, K, Tsumoto, K.
Deposit date:2014-09-08
Release date:2015-03-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:A Pore-Forming Toxin Requires a Specific Residue for Its Activity in Membranes with Particular Physicochemical Properties
J.Biol.Chem., 290, 2015
6K2G
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BU of 6k2g by Molmil
Structure of FraE in the monomer state
Descriptor: FraE
Authors:Caaveiro, J.M.M, Morante, K, Tsumoto, K.
Deposit date:2019-05-14
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:The Isolation of New Pore-Forming Toxins from the Sea AnemoneActinia fragaceaProvides Insights into the Mechanisms of Actinoporin Evolution.
Toxins, 11, 2019
4WD4
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BU of 4wd4 by Molmil
Crystal structure of human HO1 H25R
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Caaveiro, J.M.M, Morante, K, Sigala, P, Tsumoto, K.
Deposit date:2014-09-06
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis
Biochemistry, 55, 2016
4WY7
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BU of 4wy7 by Molmil
Crystal structure of recombinant 4E10 expressed in Escherichia coli with epitope bound
Descriptor: Envelope glycoprotein gp160, Fab 4E10 Heavy chain, Fab 4E10Light chain, ...
Authors:Rujas, E, Morante, K, Tsumoto, K, Nieva, J.L, Caaveiro, J.M.M.
Deposit date:2014-11-16
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Atomic Structure of the HIV-1 gp41 Transmembrane Domain and Its Connection to the Immunogenic Membrane-proximal External Region.
J.Biol.Chem., 290, 2015
3VWI
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BU of 3vwi by Molmil
High resolution crystal structure of FraC in the monomeric form
Descriptor: AMMONIUM ION, CHLORIDE ION, Fragaceatoxin C, ...
Authors:Tanaka, K, Morante, K, Caaveiro, J.M.M, Gonzalez-Manas, J.M, Tsumoto, K.
Deposit date:2012-08-23
Release date:2013-08-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
5GHW
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BU of 5ghw by Molmil
Crystal structure of broad neutralizing antibody 10E8 with long epitope bound
Descriptor: Endogenous retrovirus group K member 8 Env polyprotein, FAB 10E8 HEAVY CHAIN, FAB 10E8 LIGHT CHAIN, ...
Authors:Caaveiro, J.M.M, Rujas, E, Morante, K, Nieva, J.L, Tsumoto, K.
Deposit date:2016-06-21
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for broad neutralization of HIV-1 through the molecular recognition of 10E8 helical epitope at the membrane interface
Sci Rep, 6, 2016
3LIM
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BU of 3lim by Molmil
Crystal structure of the pore forming toxin frac from sea anemone actinia fragacea
Descriptor: Fragaceatoxin C, LAURYL DIMETHYLAMINE-N-OXIDE
Authors:Mechaly, A.E, Bellomio, A, Morante, K, Gonzalez-Manas, J.M, Guerin, D.M.A.
Deposit date:2010-01-25
Release date:2010-12-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the oligomerization and architecture of eukaryotic membrane pore-forming toxins.
Structure, 19, 2011
3ZWG
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BU of 3zwg by Molmil
Crystal structure of the pore-forming toxin FraC from Actinia fragacea (form 2)
Descriptor: FRAGACEATOXIN C
Authors:Mechaly, A.E, Bellomio, A, Morante, K, Gonzalez-Manas, J.M, Guerin, D.M.A.
Deposit date:2011-07-29
Release date:2012-07-04
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Pores of the Toxin Frac Assemble Into 2D Hexagonal Clusters in Both Crystal Structures and Model Membranes.
J.Struct.Biol., 180, 2012
5BTQ
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BU of 5btq by Molmil
Crystal structure of human heme oxygenase 1 H25R with biliverdin bound
Descriptor: BILIVERDINE IX ALPHA, Heme oxygenase 1, SULFATE ION
Authors:Caaveiro, J.M.M, Morante, K, Sigala, P, Tsumoto, K.
Deposit date:2015-06-03
Release date:2016-06-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis
Biochemistry, 55, 2016
4TSO
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BU of 4tso by Molmil
Crystal structure of FraC with DHPC bound (crystal form I)
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Fragaceatoxin C, PHOSPHATE ION, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSP
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BU of 4tsp by Molmil
Crystal structure of FraC with DHPC bound (crystal form II)
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Fragaceatoxin C, PHOSPHATE ION, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSL
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BU of 4tsl by Molmil
Crystal structure of FraC with POC bound (crystal form I)
Descriptor: ACETATE ION, FORMIC ACID, Fragaceatoxin C, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSY
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BU of 4tsy by Molmil
Crystal structure of FraC with lipids
Descriptor: 2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl-dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, Fragaceatoxin C, HEPTANE-1,2,3-TRIOL, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSN
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BU of 4tsn by Molmil
Crystal structure of FraC with POC bound (crystal form II)
Descriptor: ACETATE ION, Fragaceatoxin C, GLYCEROL, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSQ
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BU of 4tsq by Molmil
Crystal structure of FraC with DHPC bound (crystal form III)
Descriptor: 1,2-dihexanoyl-sn-glycero-3-phosphocholine, CHLORIDE ION, Fragaceatoxin C, ...
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
3W9P
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BU of 3w9p by Molmil
Crystal structure of monomeric FraC (second crystal form)
Descriptor: Fragaceatoxin C
Authors:Caaveiro, J.M.M, Tanaka, K, Tsumoto, K.
Deposit date:2013-04-09
Release date:2014-04-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
5GWF
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BU of 5gwf by Molmil
FraC with GlcNAc(6S) bound
Descriptor: 2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose, CHLORIDE ION, DELTA-actitoxin-Afr1a, ...
Authors:Caaveiro, J.M.M, Tsumoto, K.
Deposit date:2016-09-11
Release date:2017-06-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Haemolytic actinoporins interact with carbohydrates using their lipid-binding module
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 372, 2017
7W81
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BU of 7w81 by Molmil
Crystal structure of the heme-bound form of the linker-NEAT3 region of IsdH from Staphylococcus aureus
Descriptor: Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING FE
Authors:Caaveiro, J.M.M, Vu, N, Tsumoto, K.
Deposit date:2021-12-07
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and role of the linker domain of the iron surface-determinant protein IsdH in heme transportation in Staphylococcus aureus.
J.Biol.Chem., 298, 2022
5X08
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BU of 5x08 by Molmil
Crystal structure of broadly neutralizing anti-HIV-1 antibody 4E10, mutant Npro, with peptide bound
Descriptor: ACETATE ION, CHLORIDE ION, Envelope glycoprotein gp160, ...
Authors:Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K.
Deposit date:2017-01-20
Release date:2017-04-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Functional Contacts between MPER and the Anti-HIV-1 Broadly Neutralizing Antibody 4E10 Extend into the Core of the Membrane
J. Mol. Biol., 429, 2017
3ZWJ
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BU of 3zwj by Molmil
CRYSTAL STRUCTURE OF THE PORE-FORMING TOXIN FRAC FROM ACTINIA FRAGACEA (Form 3)
Descriptor: FRAGACEATOXIN C
Authors:Mechaly, A.E, Bellomioa, A, Morantea, K, Gonzalez-Manas, J.M, Guerin, D.M.A.
Deposit date:2011-08-01
Release date:2012-07-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Pores of the Toxin Frac Assemble Into 2D Hexagonal Clusters in Both Crystal Structures and Model Membranes.
J.Struct.Biol., 180, 2012
5YC5
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BU of 5yc5 by Molmil
Crystal structure of human IgG-Fc in complex with aglycan and optimized Fc gamma receptor IIIa
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Immunoglobulin gamma-1 heavy chain, ...
Authors:Caaveiro, J.M.M, Tamura, H, Tsumoto, K, Kiyoshi, M.
Deposit date:2017-09-06
Release date:2018-03-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Assessing the Heterogeneity of the Fc-Glycan of a Therapeutic Antibody Using an engineered Fc gamma Receptor IIIa-Immobilized Column.
Sci Rep, 8, 2018
5CIP
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BU of 5cip by Molmil
Crystal Structure of Unbound 4E10
Descriptor: FAB 4E10 HEAVY CHAIN, FAB 4E10 LIGHT CHAIN
Authors:Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K.
Deposit date:2015-07-13
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10
J.Virol., 89, 2015
5CIL
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BU of 5cil by Molmil
Crystal Structure of non-neutralizing version of 4E10 (WDWD) with epitope bound
Descriptor: ACETATE ION, CHLORIDE ION, FAB 4E10 HEAVY CHAIN, ...
Authors:Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K.
Deposit date:2015-07-13
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10
J.Virol., 89, 2015
5CIN
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BU of 5cin by Molmil
Crystal Structure of non-neutralizing version of 4E10 (DeltaLoop) with epitope bound
Descriptor: CHLORIDE ION, FAB 4E10 HEAVY CHAIN, FAB 4E10 LIGHT CHAIN, ...
Authors:Caaveiro, J.M.M, Rujas, E, Nieva, J.L, Tsumoto, K.
Deposit date:2015-07-13
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10
J.Virol., 89, 2015
2MG1
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BU of 2mg1 by Molmil
NMR assignment and structure of a peptide derived from the trans-membrane region of HIV-1 gp41 in the presence of hexafluoroisopropanol
Descriptor: Transmembrane protein gp41
Authors:Serrano, S, Apellaniz, B, Huarte, N.L, Nieva, J.L, Jimenez, M.A.
Deposit date:2013-10-24
Release date:2015-03-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Atomic Structure of the HIV-1 gp41 Transmembrane Domain and Its Connection to the Immunogenic Membrane-proximal External Region.
J.Biol.Chem., 290, 2015

 

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