Author results

1UM2
  • Download 1um2
  • View 1um2
Molmil generated image of 1um2
CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE WITH THE LIGATED EXTEIN SEGMENT
Descriptor:ENDONUCLEASE PI-SCEI, 21-mer from Vacuolar ATP synthase catalytic subunit A
Authors:Mizutani, R., Anraku, Y., Satow, Y.
Deposit date:2003-09-22
Release date:2004-09-22
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Protein splicing of yeast VMA1-derived endonuclease via thiazolidine intermediates.
J.Synchrotron Radiat., 11, 2004
3WPJ
  • Download 3wpj
  • View 3wpj
Molmil generated image of 3wpj
SPATIOTEMPORAL DEVELOPMENT OF SOAKED PROTEIN CRYSTAL; NATIVE
Descriptor:Lysozyme C
Authors:Mizutani, R., Saiga, R.
Deposit date:2014-01-12
Release date:2014-07-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WPK
  • Download 3wpk
  • View 3wpk
Molmil generated image of 3wpk
SPATIOTEMPORAL DEVELOPMENT OF SOAKED PROTEIN CRYSTAL; 750 SEC
Descriptor:Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R., Saiga, R.
Deposit date:2014-01-12
Release date:2014-07-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WPL
  • Download 3wpl
  • View 3wpl
Molmil generated image of 3wpl
SPATIOTEMPORAL DEVELOPMENT OF SOAKED PROTEIN CRYSTAL; 2510 SEC
Descriptor:Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R., Saiga, R.
Deposit date:2014-01-12
Release date:2014-07-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WU7
  • Download 3wu7
  • View 3wu7
Molmil generated image of 3wu7
SPATIOTEMPORAL DEVELOPMENT OF SOAKED PROTEIN CRYSTAL; DERIVATIVE 250 SEC
Descriptor:Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R., Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WU8
  • Download 3wu8
  • View 3wu8
Molmil generated image of 3wu8
SPATIOTEMPORAL DEVELOPMENT OF SOAKED PROTEIN CRYSTAL; DERIVATIVE 1080 SEC
Descriptor:Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R., Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WU9
  • Download 3wu9
  • View 3wu9
Molmil generated image of 3wu9
SPATIOTEMPORAL DEVELOPMENT OF SOAKED PROTEIN CRYSTAL; DERIVATIVE 1580 SEC
Descriptor:Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R., Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WUA
  • Download 3wua
  • View 3wua
Molmil generated image of 3wua
SPATIOTEMPORAL DEVELOPMENT OF SOAKED PROTEIN CRYSTAL; DERIVATIVE 3610 SEC
Descriptor:Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R., Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
1JVA
  • Download 1jva
  • View 1jva
Molmil generated image of 1jva
CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES
Descriptor:VMA1-DERIVED HOMING ENDONUCLEASE X10SSS
Authors:Mizutani, R., Satow, Y.
Deposit date:2001-08-29
Release date:2002-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides.
J.Mol.Biol., 316, 2002
1NGP
  • Download 1ngp
  • View 1ngp
Molmil generated image of 1ngp
N1G9 (IGG1-LAMBDA) FAB FRAGMENT COMPLEXED WITH (4-HYDROXY-3-NITROPHENYL) ACETATE
Descriptor:N1G9 (IGG1-LAMBDA), SULFATE ION, 2-(4-HYDROXY-3-NITROPHENYL)ACETIC ACID
Authors:Mizutani, R., Satow, Y.
Deposit date:1995-06-23
Release date:1996-07-11
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structures of the Fab fragment of murine N1G9 antibody from the primary immune response and of its complex with (4-hydroxy-3-nitrophenyl)acetate.
J.Mol.Biol., 254, 1995
1NGQ
  • Download 1ngq
  • View 1ngq
Molmil generated image of 1ngq
N1G9 (IGG1-LAMBDA) FAB FRAGMENT
Descriptor:N1G9 (IGG1-LAMBDA), SULFATE ION
Authors:Mizutani, R., Satow, Y.
Deposit date:1995-06-23
Release date:1996-07-11
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structures of the Fab fragment of murine N1G9 antibody from the primary immune response and of its complex with (4-hydroxy-3-nitrophenyl)acetate.
J.Mol.Biol., 254, 1995
3VW3
  • Download 3vw3
  • View 3vw3
Molmil generated image of 3vw3
ANTIBODY 64M-5 FAB IN COMPLEX WITH A DOUBLE-STRANDED DNA (6-4) PHOTOPRODUCT
Descriptor:Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3'), ...
Authors:Yokoyama, H., Mizutani, R., Satow, Y.
Deposit date:2012-07-30
Release date:2013-03-27
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a double-stranded DNA (6-4) photoproduct in complex with the 64M-5 antibody Fab
Acta Crystallogr.,Sect.D, 69, 2013
6IDG
  • Download 6idg
  • View 6idg
Molmil generated image of 6idg
ANTIBODY 64M-5 FAB IN COMPLEX WITH DT(6-4)T
Descriptor:Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), DNA (5'-D(*(64T)P*(5PY))-3')
Authors:Yokoyama, H., Mizutani, R., Noguchi, S., Hayashida, N.
Deposit date:2018-09-10
Release date:2019-02-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the antibody 64M-5 Fab and its complex with dT(6-4)T indicate induced-fit and high-affinity mechanisms
Acta Crystallogr.,Sect.F, 75, 2019
6IDH
  • Download 6idh
  • View 6idh
Molmil generated image of 6idh
ANTIBODY 64M-5 FAB IN LIGAND-FREE FORM
Descriptor:Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain)
Authors:Yokoyama, H., Mizutani, R., Noguchi, S., Hayashida, N.
Deposit date:2018-09-10
Release date:2019-02-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the antibody 64M-5 Fab and its complex with dT(6-4)T indicate induced-fit and high-affinity mechanisms
Acta Crystallogr.,Sect.F, 75, 2019
1KEG
  • Download 1keg
  • View 1keg
Molmil generated image of 1keg
ANTIBODY 64M-2 FAB COMPLEXED WITH DTT(6-4)TT
Descriptor:5'-D(*TP*(64T)P*TP*T)-3', Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain), Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain), ...
Authors:Yokoyama, H., Mizutani, R., Satow, Y., Sato, K., Komatsu, Y., Ohtsuka, E., Nikaido, O.
Deposit date:2001-11-15
Release date:2002-11-15
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the DNA (6-4) photoproduct dTT(6-4)TT in complex with the 64M-2 antibody Fab fragment implies increased antibody-binding affinity by the flanking nucleotides.
Acta Crystallogr.,Sect.D, 68, 2012
1EHL
  • Download 1ehl
  • View 1ehl
Molmil generated image of 1ehl
64M-2 ANTIBODY FAB COMPLEXED WITH D(5HT)(6-4)T
Descriptor:5'-(D(5HT)P*(6-4)T)-3', ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (LIGHT CHAIN), ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (HEAVY CHAIN)
Authors:Yokoyama, H., Mizutani, R., Satow, Y., Komatsu, Y., Ohtsuka, E., Nikaido, O.
Deposit date:2000-02-21
Release date:2001-02-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the 64M-2 antibody Fab fragment in complex with a DNA dT(6-4)T photoproduct formed by ultraviolet radiation.
J.Mol.Biol., 299, 2000
1UJ3
  • Download 1uj3
  • View 1uj3
Molmil generated image of 1uj3
CRYSTAL STRUCTURE OF A HUMANIZED FAB FRAGMENT OF ANTI-TISSUE-FACTOR ANTIBODY IN COMPLEX WITH TISSUE FACTOR
Descriptor:IgG Fab light chain, IgG Fab heavy chain, tissue factor
Authors:Ohto, U., Mizutani, R., Nakamura, M., Adachi, H., Satow, Y.
Deposit date:2003-07-25
Release date:2004-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a humanized Fab fragment of anti-tissue-factor antibody in complex with tissue factor.
J.Synchrotron Radiat., 11, 2004
3VPK
  • Download 3vpk
  • View 3vpk
Molmil generated image of 3vpk
CRYSTAL STRUCTURE OF 6-GUANIDINOHEXANOYL TRYPSIN
Descriptor:Cationic trypsin, 6-carbamimidamidohexanoic acid, CALCIUM ION, ...
Authors:Masuda, Y., Nitanai, Y., Mizutani, R., Noguchi, S.
Deposit date:2012-03-05
Release date:2012-05-23
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of 6-guanidinohexanoyl trypsin near the optimum pH reveals the acyl-enzyme intermediate to be deacylated
Proteins, 2012