Author results

1UMH
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STRUCTURAL BASIS OF SUGAR-RECOGNIZING UBIQUITIN LIGASE
Descriptor:F-box only protein 2, NICKEL (II) ION
Authors:Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-01
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of sugar-recognizing ubiquitin ligase
NAT.STRUCT.MOL.BIOL., 11, 2004
1UMI
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STRUCTURAL BASIS OF SUGAR-RECOGNIZING UBIQUITIN LIGASE
Descriptor:F-box only protein 2, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, N-ACETYL-D-GLUCOSAMINE
Authors:Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K.
Deposit date:2003-10-01
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of sugar-recognizing ubiquitin ligase
NAT.STRUCT.MOL.BIOL., 11, 2004
2E31
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STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BY SCFFBS1 UBIQUITIN LIGASE
Descriptor:F-box only protein 2, S-phase kinase-associated protein 1A
Authors:Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E32
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STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BY SCFFBS1 UBIQUITIN LIGASE
Descriptor:F-box only protein 2, S-phase kinase-associated protein 1A
Authors:Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E33
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STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BY SCFFBS1 UBIQUITIN LIGASE
Descriptor:F-box only protein 2, Ribonuclease pancreatic, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Mizushima, T., Yoshida, Y., Kumanomidou, T., Hasegawa, Y., Yamane, T., Tanaka, K.
Deposit date:2006-11-20
Release date:2007-03-20
Last modified:2014-02-26
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
2Z6O
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CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1
Descriptor:Ufm1-conjugating enzyme 1, MAGNESIUM ION
Authors:Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
2Z6P
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CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1
Descriptor:Ufm1-conjugating enzyme 1
Authors:Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
1WZV
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CRYSTAL STRUCTURE OF UBCH8
Descriptor:Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of UbcH8
To be Published
1WZW
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CRYSTAL STRUCTURE OF UBCH8
Descriptor:Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T., Suzuki, M., Teshima, N., Yamane, T., Murata, S., Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of UbcH8
To be Published
3AY4
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CRYSTAL STRUCTURE OF NONFUCOSYLATED FC COMPLEXED WITH BIS-GLYCOSYLATED SOLUBLE FORM OF FC GAMMA RECEPTOR IIIA
Descriptor:Ig gamma-1 chain C region, Low affinity immunoglobulin gamma Fc region receptor III-A, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Mizushima, T., Takemoto, E., Yagi, H., Shibata-Koyama, M., Isoda, Y., Iida, S., Satoh, M., Kato, K.
Deposit date:2011-04-28
Release date:2011-08-03
Last modified:2011-11-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for improved efficacy of therapeutic antibodies on defucosylation of their Fc glycans
Genes Cells, 16, 2011
2RJ2
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CRYSTAL STRUCTURE OF THE SUGAR RECOGNIZING SCF UBIQUITIN LIGASE AT 1.7 RESOLUTION
Descriptor:F-box only protein 2, NICKEL (II) ION, CHLORIDE ION
Authors:Vaijayanthimala, S., Velmurugan, D., Mizushima, T., Yamane, T., Yoshida, Y., Tanaka, K.
Deposit date:2007-10-14
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
4ZY3
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CRYSTAL STRUCTURE OF KEAP1 IN COMPLEX WITH A SMALL CHEMICAL COMPOUND, K67
Descriptor:Kelch-like ECH-associated protein 1, FORMIC ACID, N,N'-[2-(2-oxopropyl)naphthalene-1,4-diyl]bis(4-ethoxybenzenesulfonamide)
Authors:Fukutomi, T., Iso, T., Suzuki, T., Takagi, K., Mizushima, T., Komatsu, M., Yamamoto, M.
Deposit date:2015-05-21
Release date:2016-05-25
Last modified:2016-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming
Nat Commun, 7, 2016
2D1I
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STRUCTURE OF HUMAN ATG4B
Descriptor:Cysteine protease APG4B
Authors:Kumanomidou, T., Mizushima, T., Komatsu, M., Suzuki, A., Tanida, I., Sou, Y.S., Ueno, T., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2005-08-24
Release date:2006-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of Human Atg4b, a Processing and De-conjugating Enzyme for Autophagosome-forming Modifiers
J.Mol.Biol., 355, 2006
2DYR
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.
Deposit date:2006-09-16
Release date:2007-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase
Embo J., 26, 2007
2DYS
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BOVINE HEART CYTOCHROME C OXIDASE MODIFIED BY DCCD
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Kurauchi, T., Mizushima, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.
Deposit date:2006-09-16
Release date:2007-04-03
Last modified:2012-05-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase
Embo J., 26, 2007
2Z5B
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z5C
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W, Proteasome component PUP2
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2ZJD
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CRYSTAL STRUCTURE OF LC3-P62 COMPLEX
Descriptor:Microtubule-associated proteins 1A/1B light chain 3B precursor, undecameric peptide from Sequestosome-1
Authors:Ichimura, Y., Kumanomidou, T., Sou, Y., Mizushima, T., Ezaki, J., Ueno, T., Kominami, E., Yamane, T., Tanaka, K., Komatsu, M.
Deposit date:2008-03-05
Release date:2008-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural Basis for Sorting Mechanism of p62 in Selective Autophagy
J.Biol.Chem., 283, 2008
3AUL
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CRYSTAL STRUCTURE OF WILD-TYPE LYS48-LINKED DIUBIQUITIN IN AN OPEN CONFORMATION
Descriptor:Polyubiquitin-C
Authors:Hirano, T., Olivier, S., Yagi, M., Takemoto, E., Hiromoto, T., Satoh, T., Mizushima, T., Kato, K.
Deposit date:2011-02-09
Release date:2011-09-07
Last modified:2011-11-02
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Conformational dynamics of wild-type Lys48-linked diubiquitin in solution
J.Biol.Chem., 286, 2011
3WDZ
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CRYSTAL STRUCTURE OF KEAP1 IN COMPLEX WITH PHOSPHORYLATED P62
Descriptor:Kelch-like ECH-associated protein 1, Peptide from Sequestosome-1
Authors:Fukutomi, T., Takagi, K., Mizushima, T., Tanaka, K., Komatsu, M., Yamamoto, M.
Deposit date:2013-06-26
Release date:2013-09-04
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy.
Mol.Cell, 51, 2013
3WSO
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CRYSTAL STRUCTURE OF THE SKP1-FBG3 COMPLEX
Descriptor:F-box only protein 44, S-phase kinase-associated protein 1
Authors:Kumanomidou, T., Nishio, K., Takagi, K., Nakagawa, T., Suzuki, A., Yamane, T., Tokunaga, F., Iwai, K., Murakami, A., Yoshida, Y., Tanaka, K., Mizushima, T.
Deposit date:2014-03-18
Release date:2015-03-25
Last modified:2015-11-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3
Plos One, 10, 2015
1DDZ
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X-RAY STRUCTURE OF A BETA-CARBONIC ANHYDRASE FROM THE RED ALGA, PORPHYRIDIUM PURPUREUM R-1
Descriptor:CARBONIC ANHYDRASE, ZINC ION
Authors:Mitsuhashi, S., Mizushima, T., Yamashita, E., Miyachi, S., Tsukihara, T.
Deposit date:1999-11-12
Release date:2000-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structure of beta-carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO(2) hydration.
J.Biol.Chem., 275, 2000
3B21
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CRYSTAL STRUCTURE OF OSPI FROM SHIGELLA FLEXINERI
Descriptor:ORF169b
Authors:Sanada, T., Kim, M., Sasakawa, C., Mizushima, T.
Deposit date:2011-07-19
Release date:2012-02-22
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The Shigella flexneri effector OspI deamidates UBC13 to dampen the inflammatory response
Nature, 483, 2012
3VR0
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CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS PBAB, AN ARCHAEAL PROTEASOME ACTIVATOR
Descriptor:Putative uncharacterized protein, GOLD ION
Authors:Kumoi, K., Satoh, T., Hiromoto, T., Mizushima, T., Kamiya, Y., Noda, M., Uchiyama, S., Murata, K., Yagi, H., Kato, K.
Deposit date:2012-04-02
Release date:2013-04-03
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An archaeal homolog of proteasome assembly factor functions as a proteasome activator
Plos One, 8, 2013
3WHJ
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CRYSTAL STRUCTURE OF NAS2 N-TERMINAL DOMAIN
Descriptor:Probable 26S proteasome regulatory subunit p27, SULFATE ION, CADMIUM ION
Authors:Satoh, T., Saeki, Y., Hiromoto, T., Wang, Y.-H., Uekusa, Y., Yagi, H., Yoshihara, H., Yagi-Utsumi, M., Mizushima, T., Tanaka, K., Kato, K.
Deposit date:2013-08-26
Release date:2014-03-26
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis for Proteasome Formation Controlled by an Assembly Chaperone Nas2
Structure, 2014