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5X9A
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BU of 5x9a by Molmil
Crystal structure of calaxin with calcium
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Calaxin
Authors:Shojima, T, Hou, F, Takahashi, Y, Okai, M, Mizuno, K, Inaba, K, Miyakawa, T, Tanokura, M.
Deposit date:2017-03-06
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition
Sci Rep, 8, 2018
5YPX
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BU of 5ypx by Molmil
Crystal structure of calaxin with magnesium
Descriptor: Calaxin, MAGNESIUM ION
Authors:Shojima, T, Hou, F, Takahashi, Y, Okai, M, Mizuno, K, Inaba, K, Miyakawa, T, Tanokura, M.
Deposit date:2017-11-04
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition
Sci Rep, 8, 2018
3A0M
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BU of 3a0m by Molmil
Structure of (PPG)4-OVG-(PPG)4, monoclinic, twinned crystal
Descriptor: collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Mizuno, K, Bachinger, H.P.
Deposit date:2009-03-21
Release date:2010-03-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Stabilization of triple-helical structures of collagen peptides containing a Hyp-Thr-Gly, Hyp-Val-Gly, or Hyp-Ser-Gly sequence.
Biopolymers, 95, 2011
3A1H
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BU of 3a1h by Molmil
Crystal Structure Analysis of the Collagen-like Peptide, (PPG)4-OTG-(PPG)4
Descriptor: collagen-like peptide
Authors:Okuyama, K, Miyama, K, Mizuno, K, Bachinger, H.P.
Deposit date:2009-04-03
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Stabilization of triple-helical structures of collagen peptides containing a Hyp-Thr-Gly, Hyp-Val-Gly, or Hyp-Ser-Gly sequence.
Biopolymers, 95, 2011
2G66
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BU of 2g66 by Molmil
Crystal structure of a collagen-like peptide with 3(S)Hyp in the Xaa position
Descriptor: collagen
Authors:Schumacher, M.A, Mizuno, K, Bachinger, H.P.
Deposit date:2006-02-24
Release date:2006-08-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of a Collagen-like Polypeptide with 3(S)-Hydroxyproline Residues in the Xaa Position Forms a Standard 7/2 Collagen Triple Helix
J.Biol.Chem., 281, 2006
3ADM
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BU of 3adm by Molmil
Crystal structure of (Pro-Pro-Gly)4-Hyp-Ser-Gly-(Pro-Pro-Gly)4
Descriptor: collagen-like peptide
Authors:Okuyama, K, Miyama, K, Masakiyo, K, Mizuno, K, Bachinger, H.P.
Deposit date:2010-01-22
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Stabilization of triple-helical structures of collagen peptides containing a Hyp-Thr-Gly, Hyp-Val-Gly, or Hyp-Ser-Gly sequence.
Biopolymers, 95, 2011
3A08
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BU of 3a08 by Molmil
Structure of (PPG)4-OOG-(PPG)4, monoclinic, twinned crystal
Descriptor: collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Wu, G, Noguchi, K, Mizuno, K, Bachinger, H.P.
Deposit date:2009-03-06
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices.
Acta Crystallogr.,Sect.D, 66, 2010
3A19
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BU of 3a19 by Molmil
Structure of (PPG)4-OOG-(PPG)4_H monoclinic, twinned crystal
Descriptor: collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Hyakutake, M, Wu, G, Mizuno, K, Bachinger, H.P.
Deposit date:2009-03-28
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices.
Acta Crystallogr.,Sect.D, 66, 2010
3ABN
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BU of 3abn by Molmil
Crystal structure of (Pro-Pro-Gly)4-Hyp-Asp-Gly-(Pro-Pro-Gly)4 at 1.02 A
Descriptor: collagen-like peptide
Authors:Okuyama, K, Shimura, M, Kawaguchi, T, Noguchi, K, Mizuno, K, Bachinger, H.P.
Deposit date:2009-12-16
Release date:2010-12-01
Last modified:2013-11-27
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Crystal structure of the collagen model peptide (Pro-Pro-Gly)4 -Hyp-Asp-Gly-(Pro-Pro-Gly)4 at 1.0 angstrom resolution.
Biopolymers, 99, 2013
3B0S
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BU of 3b0s by Molmil
Crystal Structure of (Gly-Pro-Hyp)9
Descriptor: collagen-like peptide
Authors:Okuyama, K, Miyama, K, Mizuno, K, Bachinger, H.P.
Deposit date:2011-06-14
Release date:2012-05-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of (Gly-Pro-Hyp)(9) : Implications for the collagen molecular model.
Biopolymers, 97, 2012
3DMW
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BU of 3dmw by Molmil
Crystal structure of human type III collagen G982-G1023 containing C-terminal cystine knot
Descriptor: Collagen alpha-1(III) chain
Authors:Boudko, S.P, Engel, J, Okuyama, K, Mizuno, K, Bachinger, H.P, Schumacher, M.A.
Deposit date:2008-07-01
Release date:2008-09-30
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human type III collagen Gly991-Gly1032 cystine knot-containing peptide shows both 7/2 and 10/3 triple helical symmetries.
J.Biol.Chem., 283, 2008
2D3H
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BU of 2d3h by Molmil
Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4
Descriptor: COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-HYP-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G, Noguchi, K, Okuyama, K, Mizuno, K, Bachinger, H.P.
Deposit date:2005-09-28
Release date:2006-09-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009
1YM8
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BU of 1ym8 by Molmil
crystal structure of GZZ shows up puckering of the proline ring in the Xaa position.
Descriptor: collagen gly-4(R)hyp-4(R)hyp
Authors:Schumacher, M.A, Mizuno, K, Bachinger, H.P.
Deposit date:2005-01-20
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The crystal structure of the collagen-like polypeptide (glycyl-4(R)-hydroxyprolyl-4(R)-hydroxyprolyl)9 at 1.55 A resolution shows up-puckering of the proline ring in the Xaa position.
J.Biol.Chem., 280, 2005
4FBZ
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BU of 4fbz by Molmil
Crystal structure of deltarhodopsin from Haloterrigena thermotolerans
Descriptor: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-PHYTANYL-GLYCEROL, BACTERIORUBERIN, ...
Authors:Kouyama, T.
Deposit date:2012-05-23
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of deltarhodopsin-3 from Haloterrigena thermotolerans
Proteins, 81, 2013
2D3F
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BU of 2d3f by Molmil
Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Pro-Hyp-Gly-(Pro-Pro-Gly)4
Descriptor: COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-PRO-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G, Noguchi, K, Okuyama, K, Ebisuzaki, S, Nishino, N.
Deposit date:2005-09-27
Release date:2006-09-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009

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PDB entries from 2024-03-27

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