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3JRS
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BU of 3jrs by Molmil
Crystal structure of (+)-ABA-bound PYL1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
3JRQ
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BU of 3jrq by Molmil
Crystal structure of (+)-ABA-bound PYL1 in complex with ABI1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Protein phosphatase 2C 56, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
2GXG
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BU of 2gxg by Molmil
Crystal structure of EmrR homolog from hyperthermophilic archaea Sulfolobus tokodaii strain7
Descriptor: 146aa long hypothetical transcriptional regulator
Authors:Miyazono, K, Tsujimura, M, Kawarabayasi, Y, Tanokura, M.
Deposit date:2006-05-08
Release date:2007-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of archaeal homolog of multi drug resistance repressor protein, EmrR, from hyperthermophilic archaea Sulfolobus tokodaii strain7
To be Published
2DVY
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BU of 2dvy by Molmil
Crystal structure of restriction endonucleases PabI
Descriptor: Restriction endonuclease PabI
Authors:Miyazono, K, Watanabe, M, Kamo, M, Sawasaki, T, Nagata, K, Endo, Y, Tanokura, M, Kobayashi, I.
Deposit date:2006-08-01
Release date:2007-05-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Novel protein fold discovered in the PabI family of restriction enzymes
Nucleic Acids Res., 35, 2007
4YOU
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BU of 4you by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 2.20A resolution.
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOR
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BU of 4yor by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 1.52A resolution.
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOT
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BU of 4yot by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 2.15A resolution
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
1V3Z
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BU of 1v3z by Molmil
Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
Descriptor: Acylphosphatase, CHLORIDE ION, POTASSIUM ION
Authors:Miyazono, K, Tanokura, M.
Deposit date:2003-11-07
Release date:2004-11-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of acylphosphatase from hyperthermophilic archaeon Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 80, 2004
4YOW
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BU of 4yow by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dC
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*CP*CP*CP*CP*CP*CP*C)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOX
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BU of 4yox by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOY
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BU of 4yoy by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT and Mg2+ ion
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3', MAGNESIUM ION
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOV
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BU of 4yov by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dA
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*AP*AP*AP*AP*AP*AP*A)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
3OIT
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BU of 3oit by Molmil
Crystal structure of curcuminoid synthase CUS from Oryza sativa
Descriptor: Os07g0271500 protein
Authors:Miyazono, K, Um, J, Imai, F.L, Katsuyama, Y, Ohnishi, Y, Horinouchi, S, Tanokura, M.
Deposit date:2010-08-19
Release date:2010-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of curcuminoid synthase CUS from Oryza sativa
Proteins, 79, 2011
3A03
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BU of 3a03 by Molmil
Crystal structure of Hox11L1 homeodomain
Descriptor: SODIUM ION, SULFATE ION, T-cell leukemia homeobox protein 2
Authors:Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
Deposit date:2009-02-28
Release date:2010-03-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3A02
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BU of 3a02 by Molmil
Crystal structure of Aristaless homeodomain
Descriptor: CADMIUM ION, CHLORIDE ION, Homeobox protein aristaless
Authors:Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
Deposit date:2009-02-28
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3A01
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BU of 3a01 by Molmil
Crystal structure of Aristaless and Clawless homeodomains bound to DNA
Descriptor: 5'-D(*CP*CP*GP*CP*AP*AP*TP*TP*AP*AP*TP*TP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*AP*AP*TP*TP*AP*AP*TP*TP*GP*CP*GP*G)-3', Homeobox protein aristaless, ...
Authors:Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
Deposit date:2009-02-28
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
2ZBC
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BU of 2zbc by Molmil
Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7.
Descriptor: 83aa long hypothetical transcriptional regulator asnC, ISOLEUCINE
Authors:Miyazono, K, Tsujimura, M, Kawarabayasi, Y, Tanokura, M.
Deposit date:2007-10-19
Release date:2008-03-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7
Proteins, 71, 2008
3VGK
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BU of 3vgk by Molmil
Crystal structure of a ROK family glucokinase from Streptomyces griseus
Descriptor: Glucokinase, SULFATE ION, ZINC ION
Authors:Miyazono, K, Tabei, N, Morita, S, Ohnishi, Y, Horinouchi, S, Tanokura, M.
Deposit date:2011-08-15
Release date:2011-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
J.Bacteriol., 194, 2012
3VGM
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BU of 3vgm by Molmil
Crystal structure of a ROK family glucokinase from Streptomyces griseus in complex with glucose
Descriptor: Glucokinase, POTASSIUM ION, ZINC ION, ...
Authors:Miyazono, K, Tabei, N, Morita, S, Ohnishi, Y, Horinouchi, S, Tanokura, M.
Deposit date:2011-08-15
Release date:2011-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
J.Bacteriol., 194, 2012
3VGL
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BU of 3vgl by Molmil
Crystal structure of a ROK family glucokinase from Streptomyces griseus in complex with glucose and AMPPNP
Descriptor: Glucokinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SODIUM ION, ...
Authors:Miyazono, K, Tabei, N, Morita, S, Ohnishi, Y, Horinouchi, S, Tanokura, M.
Deposit date:2011-08-15
Release date:2011-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
J.Bacteriol., 194, 2012
3WAZ
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BU of 3waz by Molmil
Crystal structure of a restriction enzyme PabI in complex with DNA
Descriptor: ADENINE, DNA (5'-D(*GP*CP*AP*TP*AP*GP*CP*TP*GP*TP*(ORP)P*CP*AP*GP*CP*TP*AP*TP*GP*C)-3'), Putative uncharacterized protein
Authors:Miyazono, K, Miyakawa, T, Ito, T, Tanokura, M.
Deposit date:2013-05-10
Release date:2014-01-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi.
Nat Commun, 5, 2014
3LNQ
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BU of 3lnq by Molmil
Structure of Aristaless homeodomain in complex with DNA
Descriptor: 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3', 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3', ACETATE ION, ...
Authors:Takamura, Y, Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
Deposit date:2010-02-02
Release date:2010-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3D79
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BU of 3d79 by Molmil
Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Descriptor: Putative uncharacterized protein PH0734
Authors:Nishimura, Y, Miyazono, K, Sawano, Y, Makino, T, Nagata, K, Tanokura, M.
Deposit date:2008-05-20
Release date:2008-12-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 73, 2008
1X25
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BU of 1x25 by Molmil
Crystal Structure of a Member of YjgF Family from Sulfolobus Tokodaii (ST0811)
Descriptor: Hypothetical UPF0076 protein ST0811
Authors:Miyakawa, T, Lee, W.C, Hatano, K, Kato, Y, Sawano, Y, Miyazono, K, Nagata, K, Tanokura, M.
Deposit date:2005-04-20
Release date:2006-02-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the YjgF/YER057c/UK114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7
Proteins, 62, 2006
3ORY
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BU of 3ory by Molmil
Crystal structure of Flap endonuclease 1 from hyperthermophilic archaeon Desulfurococcus amylolyticus
Descriptor: PHOSPHATE ION, flap endonuclease 1
Authors:Mase, T, Kubota, K, Miyazono, K, Kawarabayashii, Y, Tanokura, M.
Deposit date:2010-09-08
Release date:2011-02-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of flap endonuclease 1 from the hyperthermophilic archaeon Desulfurococcus amylolyticus
Acta Crystallogr.,Sect.F, 67, 2011

 

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