Author results

2DVY
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CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASES PABI
Descriptor:Restriction endonuclease PabI
Authors:Miyazono, K., Watanabe, M., Kamo, M., Sawasaki, T., Nagata, K., Endo, Y., Tanokura, M., Kobayashi, I.
Deposit date:2006-08-01
Release date:2007-05-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Novel protein fold discovered in the PabI family of restriction enzymes
Nucleic Acids Res., 35, 2007
3A01
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CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA
Descriptor:Homeodomain-containing protein, Homeobox protein aristaless, 5'-D(*GP*GP*CP*TP*TP*AP*AP*TP*TP*AP*AP*TP*TP*GP*CP*GP*G)-3', ...
Authors:Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.
Deposit date:2009-02-28
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3A02
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CRYSTAL STRUCTURE OF ARISTALESS HOMEODOMAIN
Descriptor:Homeobox protein aristaless, CADMIUM ION, CHLORIDE ION
Authors:Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.
Deposit date:2009-02-28
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3A03
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CRYSTAL STRUCTURE OF HOX11L1 HOMEODOMAIN
Descriptor:T-cell leukemia homeobox protein 2, SODIUM ION, SULFATE ION
Authors:Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.
Deposit date:2009-02-28
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3JRQ
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CRYSTAL STRUCTURE OF (+)-ABA-BOUND PYL1 IN COMPLEX WITH ABI1
Descriptor:Protein phosphatase 2C 56, Putative uncharacterized protein At5g46790, (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
Authors:Miyazono, K., Miyakawa, T., Sawano, Y., Kubota, K., Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
3JRS
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CRYSTAL STRUCTURE OF (+)-ABA-BOUND PYL1
Descriptor:Putative uncharacterized protein At5g46790, (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid
Authors:Miyazono, K., Miyakawa, T., Sawano, Y., Kubota, K., Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
4YOR
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CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS HORIKOSHII OT3 AT 1.52A RESOLUTION.
Descriptor:3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K., Tsutsumi, K., Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOT
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CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS HORIKOSHII OT3 AT 2.15A RESOLUTION
Descriptor:3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K., Tsutsumi, K., Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOU
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CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS HORIKOSHII OT3 AT 2.20A RESOLUTION.
Descriptor:3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K., Tsutsumi, K., Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOV
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CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS HORIKOSHII OT3 IN COMPLEX WITH POLY-DA
Descriptor:3-5 exonuclease PhoExo I, 5'-D(*AP*AP*AP*AP*AP*AP*A)-3'
Authors:Miyazono, K., Ito, T., Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOW
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CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS HORIKOSHII OT3 IN COMPLEX WITH POLY-DC
Descriptor:3-5 exonuclease PhoExo I, 5'-D(*CP*CP*CP*CP*CP*CP*C)-3'
Authors:Miyazono, K., Ito, T., Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOX
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CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS HORIKOSHII OT3 IN COMPLEX WITH POLY-DT
Descriptor:3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3'
Authors:Miyazono, K., Ito, T., Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOY
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CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS HORIKOSHII OT3 IN COMPLEX WITH POLY-DT AND MG2+ ION
Descriptor:3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3', MAGNESIUM ION
Authors:Miyazono, K., Ito, T., Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2015-09-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
1V3Z
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CRYSTAL STRUCTURE OF ACYLPHOSPHATASE FROM PYROCOCCUS HORIKOSHII
Descriptor:Acylphosphatase, POTASSIUM ION, CHLORIDE ION
Authors:Miyazono, K., Tanokura, M.
Deposit date:2003-11-07
Release date:2004-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of acylphosphatase from hyperthermophilic archaeon Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 80, 2004
2GXG
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CRYSTAL STRUCTURE OF EMRR HOMOLOG FROM HYPERTHERMOPHILIC ARCHAEA SULFOLOBUS TOKODAII STRAIN7
Descriptor:146aa long hypothetical transcriptional regulator
Authors:Miyazono, K., Tsujimura, M., Kawarabayasi, Y., Tanokura, M.
Deposit date:2006-05-08
Release date:2007-03-20
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of archaeal homolog of multi drug resistance repressor protein, EmrR, from hyperthermophilic archaea Sulfolobus tokodaii strain7
To be Published
2ZBC
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CRYSTAL STRUCTURE OF STS042, A STAND-ALONE RAM MODULE PROTEIN, FROM HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS TOKODAII STRAIN7.
Descriptor:83aa long hypothetical transcriptional regulator asnC, ISOLEUCINE
Authors:Miyazono, K., Tsujimura, M., Kawarabayasi, Y., Tanokura, M.
Deposit date:2007-10-19
Release date:2008-03-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7
Proteins, 71, 2008
3OIT
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CRYSTAL STRUCTURE OF CURCUMINOID SYNTHASE CUS FROM ORYZA SATIVA
Descriptor:Os07g0271500 protein
Authors:Miyazono, K., Um, J., Imai, F.L., Katsuyama, Y., Ohnishi, Y., Horinouchi, S., Tanokura, M.
Deposit date:2010-08-19
Release date:2010-10-20
Last modified:2014-02-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of curcuminoid synthase CUS from Oryza sativa
Proteins, 79, 2011
3VGK
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CRYSTAL STRUCTURE OF A ROK FAMILY GLUCOKINASE FROM STREPTOMYCES GRISEUS
Descriptor:Glucokinase, ZINC ION, SULFATE ION
Authors:Miyazono, K., Tabei, N., Morita, S., Ohnishi, Y., Horinouchi, S., Tanokura, M.
Deposit date:2011-08-15
Release date:2011-12-07
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
J.Bacteriol., 194, 2012
3VGL
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CRYSTAL STRUCTURE OF A ROK FAMILY GLUCOKINASE FROM STREPTOMYCES GRISEUS IN COMPLEX WITH GLUCOSE AND AMPPNP
Descriptor:Glucokinase, ZINC ION, SODIUM ION, ...
Authors:Miyazono, K., Tabei, N., Morita, S., Ohnishi, Y., Horinouchi, S., Tanokura, M.
Deposit date:2011-08-15
Release date:2011-12-07
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
J.Bacteriol., 194, 2012
3VGM
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CRYSTAL STRUCTURE OF A ROK FAMILY GLUCOKINASE FROM STREPTOMYCES GRISEUS IN COMPLEX WITH GLUCOSE
Descriptor:Glucokinase, BETA-D-GLUCOSE, ZINC ION, ...
Authors:Miyazono, K., Tabei, N., Morita, S., Ohnishi, Y., Horinouchi, S., Tanokura, M.
Deposit date:2011-08-15
Release date:2011-12-07
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Substrate recognition mechanism and substrate-dependent conformational changes of an ROK family glucokinase from Streptomyces griseus
J.Bacteriol., 194, 2012
3WAZ
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CRYSTAL STRUCTURE OF A RESTRICTION ENZYME PABI IN COMPLEX WITH DNA
Descriptor:Putative uncharacterized protein, DNA (5'-D(*GP*CP*AP*TP*AP*GP*CP*TP*GP*TP*(ORP)P*CP*AP*GP*CP*TP*AP*TP*GP*C)-3'), ADENINE
Authors:Miyazono, K., Miyakawa, T., Ito, T., Tanokura, M.
Deposit date:2013-05-10
Release date:2014-01-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi
NAT COMMUN, 2014
3LNQ
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STRUCTURE OF ARISTALESS HOMEODOMAIN IN COMPLEX WITH DNA
Descriptor:Homeobox protein aristaless, 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3', 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3', ...
Authors:Takamura, Y., Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.
Deposit date:2010-02-02
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3D79
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH0734.1 FROM HYPERTHERMOPHILIC ARCHAEA PYROCOCCUS HORIKOSHII OT3
Descriptor:Putative uncharacterized protein PH0734
Authors:Nishimura, Y., Miyazono, K., Sawano, Y., Makino, T., Nagata, K., Tanokura, M.
Deposit date:2008-05-20
Release date:2008-12-09
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 73, 2008
3AI1
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH AND L-SORBOSE REVEALS THE STRUCTURE BASES OF ITS CATALYTIC MECHANISM AND HIGH SUBSTRATE SELECTIVITY
Descriptor:NADPH-sorbose reductase
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-06
Release date:2011-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI2
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THE CRYSTAL STRUCTURE OF L-SORBOSE REDUCTASE FROM GLUCONOBACTER FRATEURII COMPLEXED WITH NADPH
Descriptor:NADPH-sorbose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kubota, K., Nagata, K., Okai, M., Miyazono, K., Tanokura, M.
Deposit date:2010-05-07
Release date:2011-02-09
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
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