Author results

2ZZQ
  • Download 2zzq
  • View 2zzq
Molmil generated image of 2zzq
CRYSTAL STRUCTURE ANALYSIS OF THE HEV CAPSID PROTEIN, PORF2
Descriptor:Protein ORF3, Capsid protein
Authors:Miyazaki, N., Xing, L., Wang, C.-Y., Li, T.-C., Takeda, N., Higashiura, A., Nakagawa, A., Tsukihara, T., Miyamura, T., Cheng, R.H.
Deposit date:2009-02-23
Release date:2010-03-09
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (3.81 Å)
Cite:Role of protein domain-modularity in designating capsid assembly and antigenicity
To be Published
6J3Y
  • Download 6j3y
  • View 6j3y
Molmil generated image of 6j3y
STRUCTURE OF C2S2-TYPE PSII-FCPII SUPERCOMPLEX FROM DIATOM
Descriptor:Photosystem II reaction center protein D1, Photosystem II chlorophyll protein CP47, Photosystem II chlorophyll protein CP43, ...
Authors:Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J3Z
  • Download 6j3z
  • View 6j3z
Molmil generated image of 6j3z
STRUCTURE OF C2S1M1-TYPE PSII-FCPII SUPERCOMPLEX FROM DIATOM
Descriptor:Photosystem II reaction center protein D1, Photosystem II chlorophyll protein CP47, Photosystem II chlorophyll protein CP43, ...
Authors:Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J40
  • Download 6j40
  • View 6j40
Molmil generated image of 6j40
STRUCTURE OF C2S2M2-TYPE PSII-FCPII SUPERCOMPLEX FROM DIATOM
Descriptor:Photosystem II reaction center protein D1, Photosystem II chlorophyll protein CP47, Photosystem II chlorophyll protein CP43, ...
Authors:Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6KMW
  • Download 6kmw
  • View 6kmw
Molmil generated image of 6kmw
STRUCTURE OF PSI FROM H. HONGDECHLORIS GROWN UNDER WHITE LIGHT CONDITION
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Kato, K., Nagao, R., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-08-01
Release date:2020-01-15
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Structural basis for the adaptation and function of chlorophyll f in photosystem I
Nat Commun, 2020
6KMX
  • Download 6kmx
  • View 6kmx
Molmil generated image of 6kmx
STRUCTURE OF PSI FROM H. HONGDECHLORIS GROWN UNDER FAR-RED LIGHT CONDITION
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Kato, K., Nagao, R., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-08-01
Release date:2020-01-15
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Structural basis for the adaptation and function of chlorophyll f in photosystem I
Nat Commun, 2020
1UF2
  • Download 1uf2
  • View 1uf2
Molmil generated image of 1uf2
THE ATOMIC STRUCTURE OF RICE DWARF VIRUS (RDV)
Descriptor:Core protein P3, Outer capsid protein P8, Structural protein P7
Authors:Nakagawa, A., Miyazaki, N., Taka, J., Naitow, H., Ogawa, A., Fujimoto, Z., Mizuno, H., Higashi, T., Watanabe, Y., Omura, T., Cheng, R.H., Tsukihara, T.
Deposit date:2003-05-23
Release date:2003-10-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins.
Structure, 11, 2003
2E0Z
  • Download 2e0z
  • View 2e0z
Molmil generated image of 2e0z
CRYSTAL STRUCTURE OF VIRUS-LIKE PARTICLE FROM PYROCOCCUS FURIOSUS
Descriptor:Virus-like particle
Authors:Akita, F., Chong, K.T., Tanaka, H., Yamashita, E., Miyazaki, N., Nakaishi, Y., Namba, K., Ono, Y., Suzuki, M., Tsukihara, T., Nakagawa, A.
Deposit date:2006-10-16
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Crystal Structure of a Virus-like Particle from the Hyperthermophilic Archaeon Pyrococcus furiosus Provides Insight into the Evolution of Viruses
J.Mol.Biol., 368, 2007
3VKF
  • Download 3vkf
  • View 3vkf
Molmil generated image of 3vkf
CRYSTAL STRUCTURE OF NEUREXIN 1BETA/NEUROLIGIN 1 COMPLEX
Descriptor:Neuroligin-1, Neurexin-1-beta, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Tanaka, H., Miyazaki, N., Nogi, T., Iwasaki, K., Takagi, J.
Deposit date:2011-11-15
Release date:2012-08-01
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin.
Cell Rep, 2, 2012
6AB5
  • Download 6ab5
  • View 6ab5
Molmil generated image of 6ab5
CRYO-EM STRUCTURE OF T=1 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6AB6
  • Download 6ab6
  • View 6ab6
Molmil generated image of 6ab6
CRYO-EM STRUCTURE OF T=3 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6JEO
  • Download 6jeo
  • View 6jeo
Molmil generated image of 6jeo
STRUCTURE OF PSI TETRAMER FROM ANABAENA
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2 1, Photosystem I iron-sulfur center, ...
Authors:Kato, K., Nagao, R., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-02-06
Release date:2019-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy.
Nat Commun, 10, 2019
6JO5
  • Download 6jo5
  • View 6jo5
Molmil generated image of 6jo5
STRUCTURE OF THE GREEN ALGAL PHOTOSYSTEM I SUPERCOMPLEX WITH LIGHT-HARVESTING COMPLEX I
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Suga, M., Miyazaki, N., Takahashi, Y.
Deposit date:2019-03-20
Release date:2019-06-19
Last modified:2019-06-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I.
Nat.Plants, 5, 2019
6JO6
  • Download 6jo6
  • View 6jo6
Molmil generated image of 6jo6
STRUCTURE OF THE GREEN ALGAL PHOTOSYSTEM I SUPERCOMPLEX WITH LIGHT-HARVESTING COMPLEX I
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Suga, M., Miyazaki, N., Takahashi, Y.
Deposit date:2019-03-20
Release date:2019-06-19
Last modified:2019-06-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I.
Nat.Plants, 5, 2019
6RVV
  • Download 6rvv
  • View 6rvv
Molmil generated image of 6rvv
STRUCTURE OF LEFT-HANDED PROTEIN CAGE CONSISTING OF 24 ELEVEN-MEMBERED RING PROTEINS HELD TOGETHER BY GOLD (I) BRIDGES.
Descriptor:Transcription attenuation protein MtrB, GOLD ION
Authors:Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.
Deposit date:2019-06-03
Release date:2019-06-12
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:An ultra-stable gold-coordinated protein cage displaying reversible assembly.
Nature, 569, 2019
6RVW
  • Download 6rvw
  • View 6rvw
Molmil generated image of 6rvw
STRUCTURE OF RIGHT-HANDED PROTEIN CAGE CONSISTING OF 24 ELEVEN-MEMBERED RING PROTEINS HELD TOGETHER BY GOLD (I) BRIDGES.
Descriptor:Transcription attenuation protein MtrB, GOLD ION
Authors:Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.
Deposit date:2019-06-03
Release date:2019-06-12
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:An ultra-stable gold-coordinated protein cage displaying reversible assembly.
Nature, 569, 2019
2ZTN
  • Download 2ztn
  • View 2ztn
Molmil generated image of 2ztn
HEPATITIS E VIRUS ORF2 (GENOTYPE 3)
Descriptor:Capsid protein
Authors:Yamashita, T., Unno, H., Mori, Y., Li, T.C., Takeda, N., Matsuura, Y.
Deposit date:2008-10-08
Release date:2009-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Biological and immunological characteristics of hepatitis E virus-like particles based on the crystal structure
Proc.Natl.Acad.Sci.USA, 106, 2009
3ALP
  • Download 3alp
  • View 3alp
Molmil generated image of 3alp
CELL ADHESION PROTEIN
Descriptor:Poliovirus receptor-related protein 1, CITRIC ACID, HEXANE-1,6-DIOL
Authors:Narita, H., Nakagawa, A., Suzuki, M.
Deposit date:2010-08-05
Release date:2011-02-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Crystal Structure of the cis-Dimer of Nectin-1: implications for the architecture of cell-cell junctions
J.Biol.Chem., 286, 2011
5GJE
  • Download 5gje
  • View 5gje
Molmil generated image of 5gje
THREE-DIMENSIONAL RECONSTRUCTION OF HUMAN LRP6 ECTODOMAIN COMPLEXED WITH DKK1
Descriptor:Low-density lipoprotein receptor-related protein 6, Dickkopf-related protein 1, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Matoba, K., Mihara, E., Tamura-Kawakami, K., Hirai, H., Thompson, S., Iwasaki, K., Takagi, J.
Deposit date:2016-06-29
Release date:2017-01-18
Method:ELECTRON MICROSCOPY (21 Å)
Cite:Conformational Freedom of the LRP6 Ectodomain Is Regulated by N-glycosylation and the Binding of the Wnt Antagonist Dkk1
Cell Rep, 18, 2017
5YKU
  • Download 5yku
  • View 5yku
Molmil generated image of 5yku
THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH ZN IONS
Descriptor:Capsid protein, ZINC ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKV
  • Download 5ykv
  • View 5ykv
Molmil generated image of 5ykv
THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKX
  • Download 5ykx
  • View 5ykx
Molmil generated image of 5ykx
THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH CD ION
Descriptor:Capsid protein, CADMIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKZ
  • Download 5ykz
  • View 5ykz
Molmil generated image of 5ykz
THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P21)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL0
  • Download 5yl0
  • View 5yl0
Molmil generated image of 5yl0
THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P212121)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL1
  • Download 5yl1
  • View 5yl1
Molmil generated image of 5yl1
T=1 SUBVIRAL PARTICLE OF PENAEUS VANNAMEI NODAVIRUS CAPSID PROTEIN DELETION MUTANT (DELTA 1-37 & 251-368)
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-12-12
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
<12>