Author results

2ZZQ
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CRYSTAL STRUCTURE ANALYSIS OF THE HEV CAPSID PROTEIN, PORF2
Descriptor:Protein ORF3, Capsid protein
Authors:Miyazaki, N., Xing, L., Wang, C.-Y., Li, T.-C., Takeda, N., Higashiura, A., Nakagawa, A., Tsukihara, T., Miyamura, T., Cheng, R.H.
Deposit date:2009-02-23
Release date:2010-03-09
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (3.81 Å)
Cite:Role of protein domain-modularity in designating capsid assembly and antigenicity
To be Published
1UF2
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THE ATOMIC STRUCTURE OF RICE DWARF VIRUS (RDV)
Descriptor:Core protein P3, Outer capsid protein P8, Structural protein P7
Authors:Nakagawa, A., Miyazaki, N., Taka, J., Naitow, H., Ogawa, A., Fujimoto, Z., Mizuno, H., Higashi, T., Watanabe, Y., Omura, T., Cheng, R.H., Tsukihara, T.
Deposit date:2003-05-23
Release date:2003-10-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins.
Structure, 11, 2003
2E0Z
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CRYSTAL STRUCTURE OF VIRUS-LIKE PARTICLE FROM PYROCOCCUS FURIOSUS
Descriptor:Virus-like particle
Authors:Akita, F., Chong, K.T., Tanaka, H., Yamashita, E., Miyazaki, N., Nakaishi, Y., Namba, K., Ono, Y., Suzuki, M., Tsukihara, T., Nakagawa, A.
Deposit date:2006-10-16
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Crystal Structure of a Virus-like Particle from the Hyperthermophilic Archaeon Pyrococcus furiosus Provides Insight into the Evolution of Viruses
J.Mol.Biol., 368, 2007
3VKF
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CRYSTAL STRUCTURE OF NEUREXIN 1BETA/NEUROLIGIN 1 COMPLEX
Descriptor:Neuroligin-1, Neurexin-1-beta, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Tanaka, H., Miyazaki, N., Nogi, T., Iwasaki, K., Takagi, J.
Deposit date:2011-11-15
Release date:2012-08-01
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin.
Cell Rep, 2, 2012
6AB5
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CRYO-EM STRUCTURE OF T=1 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6AB6
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CRYO-EM STRUCTURE OF T=3 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6IB3
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STRUCTURE OF LEFT-HANDED PROTEIN CAGE CONSISTING OF 24 ELEVEN-MEMBERED RING PROTEINS HELD TOGETHER BY GOLD (I) BRIDGES.
Descriptor:Transcription attenuation protein MtrB, GOLD ION
Authors:Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.
Deposit date:2018-11-28
Release date:2019-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
To Be Published
6IB4
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STRUCTURE OF RIGHT-HANDED PROTEIN CAGE CONSISTING OF 24 ELEVEN-MEMBERED RING PROTEINS HELD TOGETHER BY GOLD (I) BRIDGES.
Descriptor:Transcription attenuation protein MtrB, GOLD ION
Authors:Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.
Deposit date:2018-11-28
Release date:2019-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.
To Be Published
2ZTN
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HEPATITIS E VIRUS ORF2 (GENOTYPE 3)
Descriptor:Capsid protein
Authors:Yamashita, T., Unno, H., Mori, Y., Li, T.C., Takeda, N., Matsuura, Y.
Deposit date:2008-10-08
Release date:2009-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Biological and immunological characteristics of hepatitis E virus-like particles based on the crystal structure
Proc.Natl.Acad.Sci.USA, 106, 2009
3ALP
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CELL ADHESION PROTEIN
Descriptor:Poliovirus receptor-related protein 1, CITRIC ACID, HEXANE-1,6-DIOL
Authors:Narita, H., Nakagawa, A., Suzuki, M.
Deposit date:2010-08-05
Release date:2011-02-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Crystal Structure of the cis-Dimer of Nectin-1: implications for the architecture of cell-cell junctions
J.Biol.Chem., 286, 2011
5GJE
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THREE-DIMENSIONAL RECONSTRUCTION OF HUMAN LRP6 ECTODOMAIN COMPLEXED WITH DKK1
Descriptor:Low-density lipoprotein receptor-related protein 6, Dickkopf-related protein 1, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Matoba, K., Mihara, E., Tamura-Kawakami, K., Hirai, H., Thompson, S., Iwasaki, K., Takagi, J.
Deposit date:2016-06-29
Release date:2017-01-18
Method:ELECTRON MICROSCOPY (21 Å)
Cite:Conformational Freedom of the LRP6 Ectodomain Is Regulated by N-glycosylation and the Binding of the Wnt Antagonist Dkk1
Cell Rep, 18, 2017
5YKU
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH ZN IONS
Descriptor:Capsid protein, ZINC ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKV
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKX
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH CD ION
Descriptor:Capsid protein, CADMIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKZ
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THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P21)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL0
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THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P212121)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL1
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T=1 SUBVIRAL PARTICLE OF PENAEUS VANNAMEI NODAVIRUS CAPSID PROTEIN DELETION MUTANT (DELTA 1-37 & 251-368)
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-12-12
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019