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3IE4
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BU of 3ie4 by Molmil
b-glucan binding domain of Drosophila GNBP3 defines a novel family of pattern recognition receptor
Descriptor: 1,2-ETHANEDIOL, Gram-Negative Binding Protein 3, ZINC ION
Authors:Mishima, Y, Coste, F, Kellenberger, C, Roussel, A.
Deposit date:2009-07-22
Release date:2009-08-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The N-terminal domain of drosophila gram-negative binding protein 3 (GNBP3) defines a novel family of fungal pattern recognition receptors
To be Published
1J1N
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BU of 1j1n by Molmil
Structure Analysis of AlgQ2, A Macromolecule(Alginate)-Binding Periplasmic Protein Of Sphingomonas Sp. A1., Complexed with an Alginate Tetrasaccharide
Descriptor: AlgQ2, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
Authors:Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K.
Deposit date:2002-12-11
Release date:2003-06-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution
J.BIOL.CHEM., 278, 2003
1KWH
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BU of 1kwh by Molmil
Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of Sphingomonas sp. A1.
Descriptor: CALCIUM ION, Macromolecule-Binding Periplasmic Protein
Authors:Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K.
Deposit date:2002-01-29
Release date:2002-02-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution.
J.Mol.Biol., 316, 2002
1Y3P
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BU of 1y3p by Molmil
Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide
Descriptor: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
Authors:Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3N
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BU of 1y3n by Molmil
Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide
Descriptor: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
Authors:Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3Q
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BU of 1y3q by Molmil
Structure of AlgQ1, alginate-binding protein
Descriptor: AlgQ1, CALCIUM ION
Authors:Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
2ZA6
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BU of 2za6 by Molmil
recombinant horse L-chain apoferritin
Descriptor: CADMIUM ION, Ferritin light chain
Authors:Yamashita, I, Mishima, Y, Park, S.-Y, Heddle, J.G, Tame, J.R.H.
Deposit date:2007-10-02
Release date:2008-01-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment
J.BIOCHEM.(TOKYO), 142, 2007
2ZA7
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BU of 2za7 by Molmil
recombinant horse L-chain apoferritin N-terminal deletion mutant (residues 1-4)
Descriptor: Ferritin light chain
Authors:Yamashita, I, Mishima, Y, Park, S.-Y, Heddle, J.G, Tame, J.R.H.
Deposit date:2007-10-02
Release date:2008-01-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment
J.BIOCHEM.(TOKYO), 142, 2007
2ZA8
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BU of 2za8 by Molmil
recombinant horse L-chain apoferritin N-terminal deletion mutant (residues 1-8)
Descriptor: CADMIUM ION, Ferritin light chain
Authors:Yamashita, I, Mishima, Y, Park, S.-Y, Heddle, J.G, Tame, J.R.H.
Deposit date:2007-10-02
Release date:2008-01-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment
J.BIOCHEM.(TOKYO), 142, 2007
2ZD0
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BU of 2zd0 by Molmil
Crystal structures and thermostability of mutant TRAP3 A5 (ENGINEERED TRAP)
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB
Authors:Watanabe, M, Mishima, Y, Yamashita, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2007-11-15
Release date:2008-04-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.
Protein Sci., 17, 2008
2ZCZ
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BU of 2zcz by Molmil
Crystal structures and thermostability of mutant TRAP3 A7 (ENGINEERED TRAP)
Descriptor: TRYPTOPHAN, Transcription attenuation protein mtrB
Authors:Watanabe, M, Mishima, Y, Yamashita, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2007-11-15
Release date:2008-04-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.
Protein Sci., 17, 2008
3WDP
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BU of 3wdp by Molmil
Structural analysis of a beta-glucosidase mutant derived from a hyperthermophilic tetrameric structure
Descriptor: Beta-glucosidase, GLYCEROL, PHOSPHATE ION
Authors:Nakabayashi, M, Kataoka, M, Ishikawa, K.
Deposit date:2013-06-19
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural analysis of beta-glucosidase mutants derived from a hyperthermophilic tetrameric structure.
Acta Crystallogr.,Sect.D, 70, 2014
8JDK
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BU of 8jdk by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.26 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
8JDJ
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BU of 8jdj by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
8JDM
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BU of 8jdm by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
8JDL
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BU of 8jdl by Molmil
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2023-05-14
Release date:2023-12-06
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.42 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
5WVO
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BU of 5wvo by Molmil
Crystal structure of DNMT1 RFTS domain in complex with K18/K23 mono-ubiquitylated histone H3
Descriptor: DNA (cytosine-5)-methyltransferase 1, Histone H3.1, Ubiquitin, ...
Authors:Ishiyama, S, Nishiyama, A, Nakanishi, M, Arita, K.
Deposit date:2016-12-28
Release date:2017-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Structure of the Dnmt1 Reader Module Complexed with a Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals the Basis for DNA Methylation Maintenance
Mol. Cell, 68, 2017
7Y7G
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BU of 7y7g by Molmil
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-06-22
Release date:2023-10-25
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.34 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
7Y7E
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BU of 7y7e by Molmil
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-06-22
Release date:2023-10-25
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
7Y7D
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BU of 7y7d by Molmil
Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-06-22
Release date:2023-10-25
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
7Y7H
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BU of 7y7h by Molmil
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-06-22
Release date:2023-10-25
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
7Y7F
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BU of 7y7f by Molmil
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-06-22
Release date:2023-10-25
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.43 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
7Y7C
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BU of 7y7c by Molmil
Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-06-22
Release date:2023-10-25
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023

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PDB entries from 2024-03-27

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