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1IRY
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BU of 1iry by Molmil
Solution structure of the hMTH1, a nucleotide pool sanitization enzyme
Descriptor: hMTH1
Authors:Mishima, M, Itoh, N, Sakai, Y, Kamiya, H, Nakabeppu, Y, Shirakawa, M.
Deposit date:2001-10-25
Release date:2003-12-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates
J.Biol.Chem., 279, 2004
1UGL
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BU of 1ugl by Molmil
Solution structure of S8-SP11
Descriptor: S-locus pollen protein
Authors:Mishima, M, Takayama, S, Sasaki, K, Jee, J.G, Kojima, C, Isogai, A, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2003-09-30
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the Male Determinant Factor for Brassica Self-incompatibility
J.Biol.Chem., 278, 2003
2E4H
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BU of 2e4h by Molmil
Solution structure of cytoskeletal protein in complex with tubulin tail
Descriptor: Restin, Tubulin alpha-ubiquitous chain
Authors:Mishima, M, Hakoshima, T.
Deposit date:2006-12-08
Release date:2007-08-28
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structural basis for tubulin recognition by cytoplasmic linker protein 170 and its autoinhibition
Proc.Natl.Acad.Sci.Usa, 104, 2007
1X60
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BU of 1x60 by Molmil
Solution structure of the peptidoglycan binding domain of B. subtilis cell wall lytic enzyme CwlC
Descriptor: Sporulation-specific N-acetylmuramoyl-L-alanine amidase
Authors:Mishima, M, Shida, T, Yabuki, K, Kato, K, Sekiguchi, J, Kojima, C.
Deposit date:2005-05-17
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of the Peptidoglycan Binding Domain of Bacillus subtilis Cell Wall Lytic Enzyme CwlC: Characterization of the Sporulation-Related Repeats by NMR(,)
Biochemistry, 44, 2005
2E30
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BU of 2e30 by Molmil
Solution structure of the cytoplasmic region of Na+/H+ exchanger 1 complexed with essential cofactor calcineurin B homologous protein 1
Descriptor: CALCIUM ION, Calcium-binding protein p22, Sodium/hydrogen exchanger 1
Authors:Mishima, M, Wakabayashi, S, Kojima, C.
Deposit date:2006-11-19
Release date:2006-12-19
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the cytoplasmic region of Na+/H+ exchanger 1 complexed with essential cofactor calcineurin B homologous protein 1
J.Biol.Chem., 282, 2007
8COG
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BU of 8cog by Molmil
Human arginylated beta-actin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
Authors:Pinto, C.S, Bakker, S.E, Suchenko, A, Hussain, H, Hatano, T, Sampath, K, Chinthalapudi, K, Mishima, M, Balasubramanian, M.
Deposit date:2023-02-28
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.499 Å)
Cite:Structure and physiological investigation of human arginylated beta-actin
To Be Published
1J0S
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BU of 1j0s by Molmil
Solution structure of the human interleukin-18
Descriptor: Interleukin-18
Authors:Kato, Z, Jee, J, Shikano, H, Mishima, M, Ohki, I, Yoneda, T, Hara, T, Torigoe, K, Kondo, N, Shirakawa, M.
Deposit date:2002-11-21
Release date:2003-11-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The structure and binding mode of interleukin-18
Nat.Struct.Biol., 10, 2003
7CKV
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BU of 7ckv by Molmil
Crystal structure of Cyanobacteriochrome GAF domain in Pr state
Descriptor: MAGNESIUM ION, PHYCOCYANOBILIN, RcaE
Authors:Nagae, T, Koizumi, T, Hirose, Y, Mishima, M.
Deposit date:2020-07-19
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of the protochromic green/red photocycle of the chromatic acclimation sensor RcaE.
Proc.Natl.Acad.Sci.USA, 118, 2021
1X26
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BU of 1x26 by Molmil
Solution structure of the AA-mismatch DNA complexed with naphthyridine-azaquinolone
Descriptor: 5'-D(*CP*AP*TP*TP*CP*AP*GP*TP*TP*AP*G)-3', 5'-D(*CP*TP*AP*AP*CP*AP*GP*AP*AP*TP*G)-3', N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BET A-ALANINAMIDE
Authors:Nakatani, K, Hagihara, S, Goto, Y, Kobori, A, Hagihara, M, Hayashi, G, Kyo, M, Nomura, M, Mishima, M, Kojima, C.
Deposit date:2005-04-20
Release date:2006-04-04
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats
Nat.Chem.Biol., 1, 2005
5ZCZ
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BU of 5zcz by Molmil
Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Heavy metal binding protein
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
5Z4B
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BU of 5z4b by Molmil
GB1 structure determination in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Protein LG
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-01-10
Release date:2019-01-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
5ZD0
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BU of 5zd0 by Molmil
Solution structure of human ubiquitin with three alanine mutations in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: ubiquitin
Authors:Tanaka, T, Ikeya, T, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
2ROG
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BU of 2rog by Molmil
Solution structure of Thermus thermophilus HB8 TTHA1718 protein in living E. coli cells
Descriptor: Heavy metal binding protein
Authors:Sakakibara, D, Sasaki, A, Ikeya, T, Hamatsu, J, Koyama, H, Mishima, M, Mikawa, T, Waelchli, M, Smith, B.O, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2008-03-21
Release date:2009-03-03
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Protein structure determination in living cells by in-cell NMR spectroscopy
Nature, 458, 2009
2ROE
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BU of 2roe by Molmil
Solution structure of thermus thermophilus HB8 TTHA1718 protein in vitro
Descriptor: Heavy metal binding protein
Authors:Sakakibara, D, Sasaki, A, Ikeya, T, Hamatsu, J, Koyama, H, Mishima, M, Mikawa, T, Waelchli, M, Smith, B.O, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2008-03-20
Release date:2009-03-03
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Protein structure determination in living cells by in-cell NMR spectroscopy
Nature, 458, 2009
7Y4N
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BU of 7y4n by Molmil
Insight into the C-terminal SH3 domain mediated binding of Drosophila Drk to Sos and Dos
Descriptor: Growth factor receptor-bound protein 2
Authors:Pooppadi, M.S, Ikeya, T, Sugasawa, H, Watanabe, R, Mishima, M, Inomata, K, Ito, Y.
Deposit date:2022-06-15
Release date:2022-08-31
Method:SOLUTION NMR
Cite:Insight into the C-terminal SH3 domain mediated binding of Drosophila Drk to Sos and Dos.
Biochem.Biophys.Res.Commun., 625, 2022
2N9K
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BU of 2n9k by Molmil
1H, 13C, and 15N Chemical Shift Assignments for in vitro GB1
Descriptor: Immunoglobulin G-binding protein G
Authors:Ikeya, T, Hanashima, T, Hosoya, S, Shimazaki, M, Ikeda, S, Mishima, M, Guentert, P, Ito, Y.
Deposit date:2015-11-26
Release date:2016-12-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Improved in-cell structure determination of proteins at near-physiological concentration
Sci Rep, 6, 2016
2N9L
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BU of 2n9l by Molmil
1H, 13C, and 15N Chemical Shift Assignments for in-cell GB1
Descriptor: Immunoglobulin G-binding protein G
Authors:Ikeya, T, Hanashima, T, Hosoya, S, Shimazaki, M, Ikeda, S, Mishima, M, Guentert, P, Ito, Y.
Deposit date:2015-11-30
Release date:2016-12-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Improved in-cell structure determination of proteins at near-physiological concentration
Sci Rep, 6, 2016
2RQL
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BU of 2rql by Molmil
Solution structure of the E. coli ribosome hibernation promoting factor HPF
Descriptor: Probable sigma-54 modulation protein
Authors:Sato, A, Mishima, M.
Deposit date:2009-08-13
Release date:2010-02-02
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the E. coli ribosome hibernation promoting factor HPF: Implications for the relationship between structure and function.
Biochem.Biophys.Res.Commun., 389, 2009
2RRD
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BU of 2rrd by Molmil
Structure of HRDC domain from human Bloom syndrome protein, BLM
Descriptor: HRDC domain from Bloom syndrome protein
Authors:Sato, A, Mishima, M, Nagai, A, Kim, S.Y, Ito, Y, Hakoshima, T, Jee, J.G, Kitano, K.
Deposit date:2010-07-19
Release date:2010-09-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the HRDC domain of human Bloom syndrome protein BLM
J.Biochem., 148, 2010
2RR3
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BU of 2rr3 by Molmil
Solution structure of the complex between human VAP-A MSP domain and human OSBP FFAT motif
Descriptor: Oxysterol-binding protein 1, Vesicle-associated membrane protein-associated protein A
Authors:Furuita, K, Jee, J, Fukada, H, Mishima, M, Kojima, C.
Deposit date:2010-03-09
Release date:2010-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Electrostatic interaction between oxysterol-binding protein and VAMP-associated protein A revealed by NMR and mutagenesis studies
J.Biol.Chem., 285, 2010
2RRK
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BU of 2rrk by Molmil
Solution structure of the E. coli ORF135 protein
Descriptor: CTP pyrophosphohydrolase
Authors:Kawasaki, K, Mishima, M.
Deposit date:2011-01-01
Release date:2012-01-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the E. coli ORF135 protein
To be Published
2RM8
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BU of 2rm8 by Molmil
The solution structure of phototactic transducer protein HtrII linker region from Natronomonas pharaonis
Descriptor: Sensory rhodopsin II transducer
Authors:Hayashi, K, Sudo, Y, Jee, J, Mishima, M, Hara, H, Kamo, N, Kojima, C.
Deposit date:2007-10-15
Release date:2007-12-04
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural Analysis of the Phototactic Transducer Protein HtrII Linker Region from Natronomonas pharaonis
Biochemistry, 46, 2007
2RT5
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BU of 2rt5 by Molmil
Structural insights into the recruitment of SMRT by the co-repressor SHARP under phosphorylative regulation
Descriptor: Msx2-interacting protein, peptide from Silencing mediator of retinoic acid and thyroid hormone receptor
Authors:Mikami, S, Kanaba, T, Mishima, M.
Deposit date:2013-04-22
Release date:2013-12-04
Last modified:2022-08-24
Method:SOLUTION NMR
Cite:Structural insights into the recruitment of SMRT by the corepressor SHARP under phosphorylative regulation.
Structure, 22, 2014
2RT3
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BU of 2rt3 by Molmil
Solution structure of the second RRM domain of Nrd1
Descriptor: Negative regulator of differentiation 1
Authors:Kobayashi, A, Kanaba, T, Mishima, M.
Deposit date:2013-04-16
Release date:2014-04-16
Method:SOLUTION NMR
Cite:Structure of the second RRM domain of Nrd1, a fission yeast MAPK target RNA binding protein, and implication for its RNA recognition and regulation
Biochem.Biophys.Res.Commun., 437, 2013
2E3I
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BU of 2e3i by Molmil
Crystal structure of the CLIP-170 CAP-Gly domain 1
Descriptor: Restin
Authors:Maesaki, R, Hakoshima, T.
Deposit date:2006-11-26
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for tubulin recognition by cytoplasmic linker protein 170 and its autoinhibition
Proc.Natl.Acad.Sci.Usa, 104, 2007

 

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