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8TB1
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BU of 8tb1 by Molmil
Solution NMR structure of a RiPP proteusin precursor protein
Descriptor: NHLP leader peptide family natural product, tumor homing peptide 1 (TH1) substrate chimera
Authors:McShan, A.C, Vinayak, A, Nguyen, N.A.
Deposit date:2023-06-28
Release date:2024-02-14
Method:SOLUTION NMR
Cite:Solution NMR structure of a RiPP proteusin precursor protein
To Be Published
7RNO
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BU of 7rno by Molmil
Model of the Ac-6-FP/hpMR1/bB2m/TAPBPR complex from integrated docking, NMR and restrained MD
Descriptor: Beta-2-microglobulin, Major histocompatibility complex class I-related gene protein, N-(6-formyl-4-oxo-3,4-dihydropteridin-2-yl)acetamide, ...
Authors:McShan, A.C, Sgourakis, N.G.
Deposit date:2021-07-29
Release date:2022-05-11
Last modified:2022-08-10
Method:SOLUTION NMR
Cite:TAPBPR employs a ligand-independent docking mechanism to chaperone MR1 molecules.
Nat.Chem.Biol., 18, 2022
8T63
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BU of 8t63 by Molmil
Solution NMR structure of designed peptide PH1 (WHMWNTVPNAKQVIAA)
Descriptor: Designed peptide PH1
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-06-15
Release date:2023-06-28
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8T62
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BU of 8t62 by Molmil
Solution NMR structure of designed peptide BH21 (TMIEDPEAGHFHTSSA)
Descriptor: Designed peptide BH21
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-06-15
Release date:2023-06-28
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8T61
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BU of 8t61 by Molmil
Solution NMR structure of designed peptide BH33 (RHYYKFNSTGRHYHYY)
Descriptor: Designed peptide BH33
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-06-15
Release date:2023-06-28
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8TXS
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BU of 8txs by Molmil
Solution NMR structure of designed peptide BH26 (RGVTVPHNGESKDYSV)
Descriptor: BH26 peptide
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-08-24
Release date:2023-09-06
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8TV4
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BU of 8tv4 by Molmil
NMR structure of temporin L in solution
Descriptor: Temporin-1Tl peptide
Authors:McShan, A.C, Jia, R, Halim, M.A.
Deposit date:2023-08-17
Release date:2023-09-06
Last modified:2024-03-27
Method:SOLUTION NMR
Cite:Antiviral peptides inhibiting the main protease of SARS-CoV-2 investigated by computational screening and in vitro protease assay.
J.Pept.Sci., 30, 2024
6NPR
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BU of 6npr by Molmil
Crystal structure of H-2Dd with C84-C139 disulfide in complex with gp120 derived peptide P18-I10
Descriptor: ARG-GLY-PRO-GLY-ARG-ALA-PHE-VAL-THR-ILE, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Toor, J, McShan, A.C, Tripathi, S.M, Sgourakis, N.G.
Deposit date:2019-01-18
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Molecular determinants of chaperone interactions on MHC-I for folding and antigen repertoire selection.
Proc.Natl.Acad.Sci.USA, 116, 2019
6MPP
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BU of 6mpp by Molmil
HLA-A*01:01 complex with NRAS Q61K peptide by NMR
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-1 alpha chain, ...
Authors:Flores-Solis, D, McShan, A.C, Sgourakis, N.G.
Deposit date:2018-10-08
Release date:2019-10-16
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:MHC-I complex determined by NMR
To Be Published
6B9K
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BU of 6b9k by Molmil
Solution NMR Structure of Unbound P18-I10
Descriptor: ARG-GLY-PRO-GLY-ARG-ALA-PHE-VAL-THR-ILE
Authors:Flores-Solis, D, McShan, A, Sgourakis, N.
Deposit date:2017-10-10
Release date:2018-07-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Peptide exchange on MHC-I by TAPBPR is driven by a negative allostery release cycle.
Nat. Chem. Biol., 14, 2018
6E5C
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BU of 6e5c by Molmil
Solution NMR structure of a de novo designed double-stranded beta-helix
Descriptor: De novo beta protein
Authors:Marcos, E, Chidyausiku, T.M, McShan, A, Evangelidis, T, Nerli, S, Sgourakis, N, Tripsianes, K, Baker, D.
Deposit date:2018-07-19
Release date:2018-11-07
Last modified:2018-11-14
Method:SOLUTION NMR
Cite:De novo design of a non-local beta-sheet protein with high stability and accuracy.
Nat. Struct. Mol. Biol., 25, 2018
6N9H
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BU of 6n9h by Molmil
De novo designed homo-trimeric amantadine-binding protein
Descriptor: (3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine, SODIUM ION, amantadine-binding protein
Authors:Park, J, Baker, D.
Deposit date:2018-12-03
Release date:2019-12-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.039 Å)
Cite:De novo design of a homo-trimeric amantadine-binding protein.
Elife, 8, 2019
5TXS
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BU of 5txs by Molmil
Crystal structure of an anaplastic lymphoma kinase-derived neuroblastoma tumor antigen bound to the Human Major Histocompatibility Complex Class I molecule HLA-B*1501
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-15 alpha chain, ...
Authors:Toor, J, Rao, A.A, Salama, S, Tripathi, S, Haussler, D, Sgourakis, N.G.
Deposit date:2016-11-17
Release date:2017-11-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.
Front Immunol, 9, 2018
5VZ5
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BU of 5vz5 by Molmil
Crystal structure of an anaplastic lymphoma kinase-derived neuroblastoma tumor antigen bound to the Human Major Histocompatibility Complex Class I molecule HLA-B*1501
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Toor, J, Rao, A.A, Salama, S, Tripathi, S, Haussler, D, Sgourakis, N.G.
Deposit date:2017-05-26
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5901 Å)
Cite:A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.
Front Immunol, 9, 2018
6AT9
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BU of 6at9 by Molmil
Crystal structure of an anaplastic lymphoma kinase-derived neuroblastoma tumor antigen bound to the Human Major Histocompatibility Complex Class I molecule HLA-A*0101
Descriptor: ALK, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Toor, J, Rao, A.A, Salama, S, Tripathi, S, Haussler, D, Sgourakis, N.G.
Deposit date:2017-08-28
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9503 Å)
Cite:A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.
Front Immunol, 9, 2018
5IVX
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BU of 5ivx by Molmil
Crystal Structure of B4.2.3 T-Cell Receptor and H2-Dd P18-I10 Complex
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Natarajan, K, Jiang, J, Margulies, D.
Deposit date:2016-03-21
Release date:2017-03-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An allosteric site in the T-cell receptor C beta domain plays a critical signalling role.
Nat Commun, 8, 2017
5IW1
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BU of 5iw1 by Molmil
Crystal Structure of B4.2.3 T-Cell Receptor
Descriptor: T-CELL RECEPTOR ALPHA CHAIN, T-CELL RECEPTOR BETA CHAIN
Authors:Natarajan, K, Jiang, J, Margulies, D.
Deposit date:2016-03-21
Release date:2017-03-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:An allosteric site in the T-cell receptor C beta domain plays a critical signalling role.
Nat Commun, 8, 2017
6OSW
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BU of 6osw by Molmil
An order-to-disorder structural switch activates the FoxM1 transcription factor
Descriptor: Forkhead box M1
Authors:Marceau, A.H, Rubin, S.M, Nerli, S, McShane, A.C, Sgourakis, N.G.
Deposit date:2019-05-02
Release date:2019-05-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:An order-to-disorder structural switch activates the FoxM1 transcription factor.
Elife, 8, 2019
6NAF
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BU of 6naf by Molmil
De novo designed homo-trimeric amantadine-binding protein
Descriptor: (3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine, SODIUM ION, amantadine-binding protein
Authors:Selvaraj, B, Park, J, Cuneo, M.J, Myles, D.A.A, Baker, D.
Deposit date:2018-12-05
Release date:2019-12-18
Last modified:2023-10-25
Method:NEUTRON DIFFRACTION (1.923 Å), X-RAY DIFFRACTION
Cite:De novo design of a homo-trimeric amantadine-binding protein.
Elife, 8, 2019
6O0I
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BU of 6o0i by Molmil
NMR ensemble of computationally designed protein XAA
Descriptor: Design construct XAA
Authors:Wei, K.Y, Moschidi, D, Nerli, S, Sgourakis, N, Baker, D.
Deposit date:2019-02-16
Release date:2020-04-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NY8
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BU of 6ny8 by Molmil
Crystal structure of computationally designed protein XAA_GVDQ with calcium
Descriptor: CALCIUM ION, CHLORIDE ION, Design construct XAA_GVDQ
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-11
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NYE
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BU of 6nye by Molmil
Crystal structure of computationally designed protein XAX
Descriptor: Design construct XAX
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-11
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NZ1
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BU of 6nz1 by Molmil
Crystal structure of computationally designed protein XXA_GVDQ
Descriptor: Design construct XXA_GVDQ
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-12
Release date:2020-04-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NXM
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BU of 6nxm by Molmil
Crystal structure of computationally designed protein XAA_GVDQ
Descriptor: Design construct XAA_GVDQ
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-08
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NZ3
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BU of 6nz3 by Molmil
Crystal structure of computationally designed protein XAA_GGHN
Descriptor: CHLORIDE ION, Design construct XAA_GGHN
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-12
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020

 

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